Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1062 ATGGCAAGAAACTTCAGATTCATGATGGATCAGAAGGATATTGTTAGATTCTTGACTACAACTGTTGATAGTTTCATTCAAGATCGATTAATCAACAAAGAGCAAAGAACCCAACACAAAGAACAGTGTGCAGAGAGGTTAGCAGCAGAAGATGGAAGTGGTGACAAAGACACTGAGGTGGAATACTCTGATCAAGCAGTATTAGCAAATCTTGATTGGGGTATTGAAGCCCTTGAGGAAGCCATCAATACCTATAACATGGAAACCAAGCTTGCAAGGCTAGATTATGCTGAGAAGATGTTGCAAGTGTGTGCAATGTTGAACCCTAAGCAAAAGATTGCTGGAGTTCCAAACTCCTACCTCTCAGCTTGGGCACACCTAAACCTATCCTATTTATGGAAGCTGAGGAATAATGTTCAGAATTGTATTTCTCATGCTCTTGAGATGTTCATCGTTGATCCCTTTTTCACTCGGATTGATTTCGCTCCAGAACTCTGGAAAAGCCTGTTTCTTCCACACATGAGCTCAATTGTGGGGTGGTATTCAGAGGAGAGGCACAGGCTTATGATGGAGGTGATACCTGACTCTGCTGATTTGTCCTTCACAGCTGATTTTGAGCAATTTTTCAATGAGTCTTTGGTGCTTACTATGAGGCCACATCAATTGGAAAAGTTGCAAAAGCTGGAGCAGCTTTATGGAGAGTCCTTGGATGAAAACACAAAACTATATGCAAAATACTATAACGATTGCATGAACTCTGATTCCTCCTCAAGTAAGAAGGCGGTTCCTATGTTGCCAATTGCTGAGCCCCCAATGACTCCTTTGCATGAGTTGAGCCGGACTATTCCAGATTTTGTTAAATTTGGTCCTATTTTACCTAAGAGTGCTGGTTTTTCTCTGGCACCAAGATCTAAAGATGTCTTAAATGAAACAATCAGAGAGAATGTAACTTCCAGCAACTTGAAGGAGGAAAAATTATCCATATGGGGTGCTAAGGATACCATCATTGAAGAGAATGAAGATGATTCAGATTCTGAGCTTGAGAATGAATCTGTGGATTCTGATGACAAAAACAATATTTTCTCACCTGGAATGAAGATGATGAAGTATGAGGGTGTTGAAACAAAAGTTGATCTATCATGCCAGAGGAATCAAATACCTTCTCCTGATATCTTCTCTCCCTTGGATTCTCCAAGAACTGCTCCAAATAATTCATCTCCAAACCCTGATATGCATAGTAAAAGAGATTCCAAGTTTTTGCGCTTATCATCTAGCCGCATCAGGGAACCAACTATTTCTGACTCCTTAACATCATCTCCAGACATTAGCATTGATAACATTTCAAATGCTGATAACGAAGTGATGGTCTTGAAGAATATTCAGAGGAAAAATGATAACCAAACACTGAGTATGAATCATGAGAATGAGAACAGCCTGATACTAAATGGCAGTTCCCTTTGTGAAAGTGATGATGGATATCAAAGCTTCAATTCATTGCCAAAATTAGAGAAGCTGAGTATGGGATCAAAACCACCCAAAGATTTTGTTTGCCCAATTACAGGTCAGATATTCTGCGATCCTGTCACCCTTGAAACTGGCCAAACCTATGAGAGAAAAGCAATTCAAGAGTGGCTCAGAACAGGAAACACAACATGCCCCATCACGCGACAGCCTCTATCTGCAAGCATATTACCCAAAACAAACTATGTTTTGAAGAGATTGATTACATCTTGGAAAGAACAGAATCCTGAACTAGCTCAAGAGTTCTCAAATGTTAACACACCAAGGGGTTCTTCCTGTTCTCCATCAGCAAAAGACATCCCAATGCTCTCAACTAGGCAAAGAACAACTGATTCACCAAATCATAAGAACAAAGATTATGCTAGACAAAGGAGCAATAGATTTATGCCAGCTGCTATCACAACGTCTCCGACAAGTGTGCTATCTCAAGCTGCAGTTGAAACAATTGTGAATTCCTTGAAACCTTACATTTCAAGTCTATGCACATCAGAGAACTTGCCAGAATGTGAAGAAGCTGTATTGAAAATAGCAAGATTGTTAAAGGACTCAAAGACTAATCCTCAGATTCATTCTTATTTATCAAAGCCAACTATTATAAATGGTTTAGTGGAAATTCTTTCAGCTTCTCGGAATAGAGAAGTTCTGAGAACATCAATTTATATTCTTTCTGAGCTGATTTTCACAGATGACAGTGTTGCAGAAACACTTAATAGTGTAGATTCTGATTTTGATTGCTTGGCTACTCTACTCAAGAATGGTTTGGCTGAGGCTGCTCTTCTTATTTACCAACTACGGCCGGTTTTTGCCCAGCTTTCAGCTCATGAACTTATACCCTCTCTTGTTGATGTGATCCAGAACAAAAATGAGGAGTTAGATGATTTTCAGTTAGTTATAGACCCCAAAGACGCTGCCATAGCTATTCTTGAACAAACTTTAATGGGAGGGGATGAATATAGCAGGTCTCTTAATGCTTCGAGTGTTATTTCAGCAAATGGAATTCCAACCTTGGTGAAGTATTTGGAGAGGATGGAAGGAAGGAGGTCTGTGGTTTCCGTGCTCTTGTGTTGTATGCAAGCTGAAAAAAGTTGCAAGAACTTGATAGCAAACAGAATTGAATTGTCTCCTGTTCTTGAATTATTCCACTCAGGAAATGATAGTGTGAGAGGAACATGTGTGGAGTTTCTCTCAGAACTGGTTCAATTAAATAGAAGGACAAGCTGCAACCAGATACTGCACACAATTAAGGATGAAGGAGCATTCAGTACAATGCATACATTTCTTGTATATCTTCAGATGGCTCCTATGGAGCATCAACTTGCTGTTGCTAGTCTCCTTCTTCAGCTTGATCTCCTGGCTGAGCCACGAAAGATGAGCATTTACAGGGAAGAAGCTGTAGAGACTCTGATAGAAGCACTTTGGCAGAAAGACTTCTCAAATACCCAAATGAAGGCTTTAGATGCTTTACTATTTCTTATTGGACACATCTCTTCCTCCGGAAAGTCATACACTGAAGCTTGGTTGCTCAAGATTGCAGGATTTGATCAACCTTACAATGCTTTAATGAAGGTCGAGCAGTTAGGACAGCATGACAATGATTTGATAGAAACAATGGAGGATGAAAAAAATGCTTTGAACTCTTGGCAGAAAAGAATAGCATCTGTGCTTTGTAATCATGAAAATGGTTCAATATTTAAGGCTTTGGAAGAATGCCTAAAAAGTAATTCCTTAAAGATGGCAAAGTCATGCCTTGTTCTAGCCACATGGCTCACACACATGCTCTATACTCTTCCCGATACCGGTGTAAGGGATGTTGCTCGCAAATCCTTGCTTGAAGAAGTTATAAATGTTCTTCAGTCGTCCAAGAACTTGGAGGAGAAGATCCTGGCTACCCTAGCTTTGAAGACATTCATTAGTGATCCAAGTACTCATGAAGCTCTTAGAGTTTACGCTAAAAGCATCTATAGAACCTTGAGGAGGCTGAAGAAATATTCAGTGGTTGCAGTTGATATTATGAAAGTCATACTAAATTTAAAATCTGTCGATGTGACAGAATTGTGGAGTTGTAAAGAAGTTGTTGAGTTAGATTTGAGCTCAAATGGTGAGGTGCTTTCTATGGTTTATCTGAATGGTCAAGTCTTGAGTGGACACACTGATGGAACTATCAAGGTATGGGATGCAAGGAAGAGAATACCAAGAGTGATTCAAGAAACTCATGAACACACAAAAGCTGTAACATCTCTTTGTTCTTCAGGTGATAGACTATACAGTGGCTCCTTAGACAAAACCATCAGGGTTTGGACAATTAAATCTGATGGTATTAAATGTATAGATGTTTATGACATTAAGGAGGCAGTGCATGAGCTTGCAGCCAATGATAAATTGGCATGCTATGTCTCTCAAGGAACTGGTGTTAAGGTTTTTAATTGGTCAGAGGCTCCAAAGCTCATCAATTTCAGCAAATATGTGAAAAGCCTTGCTGTTGCTGGGGACAAGCTGTATTGTGGTTGCTCTGGTTACAGCATCCAGGAGGTTGACTTGTCAACATATACATCAAATTCCTTCTTCACTGGTACAAGAAAATTGTTGGGGAAACAAACCATACACTCCCTTCAAATACATGATGATTACCTCTTTGCTTGTGGTTCTTCAGTTGATGCAACTGCCGGAAAGATATTTTCACTTTCCCAAAAAATGGTGGTGGGATCACTCTCAACTGGGCTTGACATTCATCGCATAGCCATCAACAGTGACTTCATATTTGCTGGTACAAAATTTGGCACCATTGAGGTTTGGCTGAAAGATAAGTTTACCCGGGTTGCTTCCATCAAAATGGCTGGTGGTCACACAAAAATTACATCATTAGTATCAGATGTAGATGGTATGATGCTTTTTGTTGGTTCCTCTGATGGCAAAATCCAGGTTTGGGCTTTGGATTAA 4458 0.3979 MARNFRFMMDQKDIVRFLTTTVDSFIQDRLINKEQRTQHKEQCAERLAAEDGSGDKDTEVEYSDQAVLANLDWGIEALEEAINTYNMETKLARLDYAEKMLQVCAMLNPKQKIAGVPNSYLSAWAHLNLSYLWKLRNNVQNCISHALEMFIVDPFFTRIDFAPELWKSLFLPHMSSIVGWYSEERHRLMMEVIPDSADLSFTADFEQFFNESLVLTMRPHQLEKLQKLEQLYGESLDENTKLYAKYYNDCMNSDSSSSKKAVPMLPIAEPPMTPLHELSRTIPDFVKFGPILPKSAGFSLAPRSKDVLNETIRENVTSSNLKEEKLSIWGAKDTIIEENEDDSDSELENESVDSDDKNNIFSPGMKMMKYEGVETKVDLSCQRNQIPSPDIFSPLDSPRTAPNNSSPNPDMHSKRDSKFLRLSSSRIREPTISDSLTSSPDISIDNISNADNEVMVLKNIQRKNDNQTLSMNHENENSLILNGSSLCESDDGYQSFNSLPKLEKLSMGSKPPKDFVCPITGQIFCDPVTLETGQTYERKAIQEWLRTGNTTCPITRQPLSASILPKTNYVLKRLITSWKEQNPELAQEFSNVNTPRGSSCSPSAKDIPMLSTRQRTTDSPNHKNKDYARQRSNRFMPAAITTSPTSVLSQAAVETIVNSLKPYISSLCTSENLPECEEAVLKIARLLKDSKTNPQIHSYLSKPTIINGLVEILSASRNREVLRTSIYILSELIFTDDSVAETLNSVDSDFDCLATLLKNGLAEAALLIYQLRPVFAQLSAHELIPSLVDVIQNKNEELDDFQLVIDPKDAAIAILEQTLMGGDEYSRSLNASSVISANGIPTLVKYLERMEGRRSVVSVLLCCMQAEKSCKNLIANRIELSPVLELFHSGNDSVRGTCVEFLSELVQLNRRTSCNQILHTIKDEGAFSTMHTFLVYLQMAPMEHQLAVASLLLQLDLLAEPRKMSIYREEAVETLIEALWQKDFSNTQMKALDALLFLIGHISSSGKSYTEAWLLKIAGFDQPYNALMKVEQLGQHDNDLIETMEDEKNALNSWQKRIASVLCNHENGSIFKALEECLKSNSLKMAKSCLVLATWLTHMLYTLPDTGVRDVARKSLLEEVINVLQSSKNLEEKILATLALKTFISDPSTHEALRVYAKSIYRTLRRLKKYSVVAVDIMKVILNLKSVDVTELWSCKEVVELDLSSNGEVLSMVYLNGQVLSGHTDGTIKVWDARKRIPRVIQETHEHTKAVTSLCSSGDRLYSGSLDKTIRVWTIKSDGIKCIDVYDIKEAVHELAANDKLACYVSQGTGVKVFNWSEAPKLINFSKYVKSLAVAGDKLYCGCSGYSIQEVDLSTYTSNSFFTGTRKLLGKQTIHSLQIHDDYLFACGSSVDATAGKIFSLSQKMVVGSLSTGLDIHRIAINSDFIFAGTKFGTIEVWLKDKFTRVASIKMAGGHTKITSLVSDVDGMMLFVGSSDGKIQVWALD* 1486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1062 1485 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1451 1485 - -
Lja5g1062 1485 ProSiteProfiles Trp-Asp (WD) repeats profile. 1244 1277 IPR001680 GO:0005515
Lja5g1062 1485 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1244 1277 - -
Lja5g1062 1485 MobiDBLite consensus disorder prediction 337 363 - -
Lja5g1062 1485 Gene3D - 1281 1485 IPR015943 GO:0005515
Lja5g1062 1485 Gene3D - 1184 1280 IPR015943 GO:0005515
Lja5g1062 1485 SUPERFAMILY WD40 repeat-like 1217 1484 IPR036322 GO:0005515
Lja5g1062 1485 SUPERFAMILY ARM repeat 652 1166 IPR016024 -
Lja5g1062 1485 SUPERFAMILY RING/U-box 510 583 - -
Lja5g1062 1485 ProSiteProfiles Trp-Asp (WD) repeats profile. 1219 1232 IPR001680 GO:0005515
Lja5g1062 1485 MobiDBLite consensus disorder prediction 384 410 - -
Lja5g1062 1485 Coils Coil 1113 1133 - -
Lja5g1062 1485 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 1485 - -
Lja5g1062 1485 MobiDBLite consensus disorder prediction 384 417 - -
Lja5g1062 1485 SMART WD40_4 1194 1232 IPR001680 GO:0005515
Lja5g1062 1485 SMART WD40_4 1237 1274 IPR001680 GO:0005515
Lja5g1062 1485 SMART WD40_4 1442 1483 IPR001680 GO:0005515
Lja5g1062 1485 Pfam U-box domain 512 582 IPR003613 GO:0004842|GO:0016567
Lja5g1062 1485 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 496 593 IPR013083 -
Lja5g1062 1485 MobiDBLite consensus disorder prediction 337 351 - -
Lja5g1062 1485 CDD RING-Ubox_PUB 515 557 IPR045210 -
Lja5g1062 1485 ProSiteProfiles U-box domain profile. 510 585 IPR003613 GO:0004842|GO:0016567
Lja5g1062 1485 ProSiteProfiles Trp-Asp (WD) repeats profile. 1451 1485 IPR001680 GO:0005515
Lja5g1062 1485 Pfam WD domain, G-beta repeat 1245 1273 IPR001680 GO:0005515
Lja5g1062 1485 Pfam WD domain, G-beta repeat 1453 1482 IPR001680 GO:0005515
Lja5g1062 1485 Pfam WD domain, G-beta repeat 1217 1232 IPR001680 GO:0005515
Lja5g1062 1485 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 1485 - -
Lja5g1062 1485 SMART Ubox_2 514 578 IPR003613 GO:0004842|GO:0016567
Lja5g1062 1485 Gene3D - 657 936 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1062 Lja-Chr5 10716228 10725166 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1062 502 582 U-box Gene Family AT1G49780 47.561 1.00e-16 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1062 - - gmx:100776142 2472.2