Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1052 ATGAGTGACGACCAAGAGTTAACAAGAGTAGGGTATTTCCTAGTATTGATTACCTTCCTGATTGTTCTAACCTTTTTTCTTACCTTTGCCTCTTACCTCTGCACTAAACCTCCTCATCCAATTTCATCCGTTCCATCTGATGAGCCTGTAGTTGGTGGTCACAATGACACAATCACAGACACCAACCAGATTACACCAATCACTGTGGAGCCTGCAGAGCCACGCTTAGATGAGACTGTGGCTACAACAGTGTGTAGCAACCCAAACCCAAGCAGTACTCTTCTATTCTCCAAAGGACATGAGAAACTATGTCGTAGTGGAAGTTCAAGTTGTTTTTGCTGTTCCATATGCTTGATGGATTACAAGGAGTCTGATTTGTTGAGATTGCTACCTGGTTGTGGACATTTCTTCCATGTCATGTGTGTTGATCCTTGGTTGAGGATGAATTTATCTTGCCCGGTTTGCAGGAGGATACCAATTATAACACGCGTGCGTGTCGAGCCCGAACGCGTGCGTGTTGAGCCCGAAACATTTACATCATGA 543 0.4438 MSDDQELTRVGYFLVLITFLIVLTFFLTFASYLCTKPPHPISSVPSDEPVVGGHNDTITDTNQITPITVEPAEPRLDETVATTVCSNPNPSSTLLFSKGHEKLCRSGSSSCFCCSICLMDYKESDLLRLLPGCGHFFHVMCVDPWLRMNLSCPVCRRIPIITRVRVEPERVRVEPETFTS* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1052 180 Pfam Ring finger domain 114 156 IPR001841 -
Lja5g1052 180 SUPERFAMILY RING/U-box 113 160 - -
Lja5g1052 180 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 4 165 IPR045899 -
Lja5g1052 180 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 4 165 - -
Lja5g1052 180 ProSiteProfiles Zinc finger RING-type profile. 114 156 IPR001841 -
Lja5g1052 180 SMART ring_2 114 155 IPR001841 -
Lja5g1052 180 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 160 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1052 Lja-Chr5 10650457 10651298 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1052 108 160 C3H Transcription Factor Family AT5G06490 60.377 1.00e-18 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1052 - - mtr:MTR_1g090440 140.198