Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1051 ATGGATAACAATAGCAACTCAGAACCAACCCACCAAGGTGGAGGCCTTGGTATCAATGGGTTCACATATATCATTGTTTTTGTGATTGGCCTCATCTTCTTACTCCTCAGCGTCGGTTTTGCTTGTGTGCGCCTTCGCATGTCTCAATCTCTCAACATATTCAACATTCTGGCTGGTTTTCCACCACCGCGTACTGCAGGAGAAGAAGAATCACAAGACATGGAACAAGGCCTTCGTGATGATCATAACATGGACAATAGTTTTGAGAGCTACCCGAAACTGCTTTACTCCGAAGTTGTGAAAAAAAGTGATTCTAGTGTTTCTTCTTGCTGCTCAATCTGCTTAGGGGATTACAAGGAAGCTGACACACTGAGGATGCTTCCTGATTGTGGCCATGTCTACCACCTTGCTTGTGTTGATCCATGGCTCAAGTTTCATTCCACTTGTCCCATATGTCGAAAATCTTCTGTTCAAAGCTCCATAAAAGTCTAG 492 0.439 MDNNSNSEPTHQGGGLGINGFTYIIVFVIGLIFLLLSVGFACVRLRMSQSLNIFNILAGFPPPRTAGEEESQDMEQGLRDDHNMDNSFESYPKLLYSEVVKKSDSSVSSCCSICLGDYKEADTLRMLPDCGHVYHLACVDPWLKFHSTCPICRKSSVQSSIKV* 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1051 163 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 157 IPR013083 -
Lja5g1051 163 ProSiteProfiles Zinc finger RING-type profile. 111 153 IPR001841 -
Lja5g1051 163 SMART ring_2 111 152 IPR001841 -
Lja5g1051 163 SUPERFAMILY RING/U-box 90 157 - -
Lja5g1051 163 CDD RING-H2_PA-TM-RING 113 153 - -
Lja5g1051 163 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 18 160 IPR045899 -
Lja5g1051 163 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 18 160 - -
Lja5g1051 163 Pfam Ring finger domain 111 153 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1051 Lja-Chr5 10647676 10648167 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1051 4 159 C3H Transcription Factor Family AT5G06490 31.818 2.00e-25 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1051 - - lja:Lj5g3v1697720.1 213.386