Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1050 ATGGACAAGAATAGCACCTCAGAACCAACCCACCAAGGCGATGGCGTTGACATCAATGGGTTCACATATATCATTGTTTTTGTGATTGGCCTCATCTTCTTACTCCTCAGCGTAGGTATTGCTTGTGTGCGCCTTCGCATGTCTCAACCTCTCAACATATTCAACATTCTGGCTGGTTTTCCACCACCTCGTAATGCAGGAGAAGAAGAGTTACAAGACATGGAACAAGGCATTCGTGATGGTCATGATGATCATAACATGGACAATAGTTTTGAGAGCTACCCGAAGCTATTGTACTCTGAAGTTGAGAAAAAAAGTGATTCTAGTGTCTCTTCTAGCTGCTCAATTTGCTTAGGGGATTACAAGGAAGCTGACACTTTGAGGATGCTTCCTGATTGTGGCCATGTTTATCACCTTGCTTGTGTTGATCCATGGCTCAGGTTTCATTCTACTTGTCCCATATGTCGAAAATCTTCTGTTCAAAGCTCCATAATAGTCTAG 501 0.4291 MDKNSTSEPTHQGDGVDINGFTYIIVFVIGLIFLLLSVGIACVRLRMSQPLNIFNILAGFPPPRNAGEEELQDMEQGIRDGHDDHNMDNSFESYPKLLYSEVEKKSDSSVSSSCSICLGDYKEADTLRMLPDCGHVYHLACVDPWLRFHSTCPICRKSSVQSSIIV* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1050 166 SUPERFAMILY RING/U-box 93 160 - -
Lja5g1050 166 Pfam Ring finger domain 113 156 IPR001841 -
Lja5g1050 166 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 13 162 IPR045899 -
Lja5g1050 166 ProSiteProfiles Zinc finger RING-type profile. 114 156 IPR001841 -
Lja5g1050 166 SMART ring_2 114 155 IPR001841 -
Lja5g1050 166 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 13 162 - -
Lja5g1050 166 CDD RING-H2_PA-TM-RING 116 156 - -
Lja5g1050 166 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 160 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1050 Lja-Chr5 10642654 10643353 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1050 4 162 C3H Transcription Factor Family AT5G06490 32.961 7.05e-24 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1050 - - lja:Lj5g3v1697720.1 235.343