Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1042 ATGGACGGTGGCGCCGGCATCTTCCTCGACTCCGAGACGGCGCGCGTCGGCGCTGTTGGAGTTGCAGGTCAAAAAGCAAAGAGAGGGAAAATGGTGAAGGGGGATTCTGTTTCTGTGGGAACTGCTCAGAAGAAAAAGCTGGCTGACATTACCAATCGGGACCAACAACAGCGACCCATTACTCAACAAGCAAACCAACAAGCTGCAACAATTGCTGCACCTGGCATCACTTCTGACCAGCTTCTCAATGAAAATGCAATGTTGATGAAGGTCCTAGCTAACAGAAATGCGGTAATAGAATCATGTAAGGCAGAGCTACAGAAGTCTCAAACCAATTATCTGAGACTGCGGAAGGAAAATTCAGAACTTGCGCTGACAAACACTCATATAATGGCGGAGCTTAATTCAAGTAAACAGAGGCTAAGGGAACTTCAGCATGAACTAGGAATGAAGAATGGTATGCTCAGAGCTATGAAATTAGAATTGACGGCAAAAGAGCACACAGAAAAATCGAATCGGGAAATTGAAGCAAACGAGGTCAAAGCATCTCACAGTAAGGAGTTAGATCAAACACTTCAAGAAGATGCCAGGGAGAAAACAAAAAGGAAGAGGGTGTCCAGATCTCAATCATCTGCACCTGCTGTCATTAAACAAGTAAAATCCATAGAAAAGGTTGAAAACAAGAGGTATTCTTTGAGAAGGCAATCGGCAGGGTTGCAAGCTGAAAAATCACAACCAACAGAAGACTCTGAGGTAGCTCAAGTCAAATATGATGTCGCGCATTTACAAGAAAATTTGGAAAACGAAAATGGACCAACATCATCTGAAGTTCATGAAGAAGCCAAAGAAGATGCCGAATGTAATTCTTCAGGACCAGCTAACACCGAACAAGTTCATGCCAAAAAGAATATTGAAAATAAGAGGCAAAGTTTGAGAAGGCAATCTTCCATGTTCAAGCCTGAGAATCTAGAACCAACTGAAGACTTCTTTGAGGTAGATGATGCGAAATTTCCAGTCTTATGTGCTACTGATATGTCAGAACAAAGTCATCCAACAACATCAAGTGTAACTTCTGGTCAAGAAAACAATACCTGTGTGTATGATCCTCGGGAAATTCGAAGATCATCTGTTGGGCGGCCTTCGCGTAGATCAGCTGTGAAGGTTGTGTCCTATAAGGAAATTCCTGTTAACGTGAAGATGCGCAGACCTAATTAG 1215 0.4296 MDGGAGIFLDSETARVGAVGVAGQKAKRGKMVKGDSVSVGTAQKKKLADITNRDQQQRPITQQANQQAATIAAPGITSDQLLNENAMLMKVLANRNAVIESCKAELQKSQTNYLRLRKENSELALTNTHIMAELNSSKQRLRELQHELGMKNGMLRAMKLELTAKEHTEKSNREIEANEVKASHSKELDQTLQEDAREKTKRKRVSRSQSSAPAVIKQVKSIEKVENKRYSLRRQSAGLQAEKSQPTEDSEVAQVKYDVAHLQENLENENGPTSSEVHEEAKEDAECNSSGPANTEQVHAKKNIENKRQSLRRQSSMFKPENLEPTEDFFEVDDAKFPVLCATDMSEQSHPTTSSVTSGQENNTCVYDPREIRRSSVGRPSRRSAVKVVSYKEIPVNVKMRRPN* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1042 404 MobiDBLite consensus disorder prediction 300 314 - -
Lja5g1042 404 MobiDBLite consensus disorder prediction 345 383 - -
Lja5g1042 404 MobiDBLite consensus disorder prediction 164 202 - -
Lja5g1042 404 MobiDBLite consensus disorder prediction 164 218 - -
Lja5g1042 404 Coils Coil 222 242 - -
Lja5g1042 404 PANTHER SHUGOSHIN 2 30 403 IPR044693 GO:0000775|GO:0034090|GO:0045144
Lja5g1042 404 MobiDBLite consensus disorder prediction 264 326 - -
Lja5g1042 404 PANTHER SHUGOSHIN 2 30 403 - -
Lja5g1042 404 MobiDBLite consensus disorder prediction 345 365 - -
Lja5g1042 404 Pfam Shugoshin C terminus 378 402 IPR011515 GO:0000775|GO:0005634|GO:0045132
Lja5g1042 404 Coils Coil 99 119 - -
Lja5g1042 404 Coils Coil 127 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1042 Lja-Chr5 10574139 10576851 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1042 - - gmx:100800445 447.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2670 5 53267989 53268822 Lja5g1042 5 10574139 10576851 ECH
Lja5g1042 5 10574139 10576851 Lja5g1042 5 10574139 10576851 ECH