Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1040 ATGTTTTCTAGGTTGATTAGTCCTCATGAAGGAGCTATGGTGCAGGAAGACATGCAGGGTGGTGTGAACCACACTCACCTGGGAGACCCGTGTCTTGTTCTGACTTCTGATCCGAAACCTCGCCTTCGTTGGACTACTGACCTTCATGAACGGTTTGTTGATGCTGTCACTCAGCTTGGGGGTCCCAGTAAAGCCACACCAAAAGCAATTATGAGGACAATGAATGTCAAGGGCTTGACACTCTATCACTTAAAGAGTCATCTTCAGAAGTACAGGCTTGGTAAGCAATCAGGAAAAGATTCTGACGACGGAGGCAAAGATGCTTCATATCCTCTGGAAAGCCCTGGAACTGATAACTCATCTCCAATGTTACCAGCTTCTGATGCAAACGAGGGTCATGAAGTCAAGGAGGCATTACGGGCACAAATGGAAGTGCAAAGTAAACTACATTTGCTTGTGGAGGCTGAGAAGCACTTACAAATTCGCCAGGATGCAGAACAGAGATATATGGCTATGGTTGAGAGAGCGTGTAAAATGTTGGCTGATCAATTTATCGGCAATACAATTTTAGACAGTGACAGCCAGAAACTTCAAGGACTGGAAAATCGAGCACCAACTAGTTCCTTAGTTGACTCCCTCGGCTTTTGCTCCCTACCGGGTTCCATGGTAGGTGGAATGCATGTTTCAGAAGTGCCGCATATCCTTCAGCCACAGGGAGTTGACTATTCTACTGAAAGTTGCCTAACATCACTCGAGAGTCTTAGAGGGTTGGCGCTAGAAGGGTCCCCTGGTGGAACGAAGAAGAGAATGCTGAGCTTGGACTCTATGGTAGTGCCTTTGATCTGGAGTGAAACCAACATGAGAACTCAGGGGTTCCATTTAGCCCAAGTCAATCCTCAAGGAATAACTAGGTATGGCATGTAG 924 0.4654 MFSRLISPHEGAMVQEDMQGGVNHTHLGDPCLVLTSDPKPRLRWTTDLHERFVDAVTQLGGPSKATPKAIMRTMNVKGLTLYHLKSHLQKYRLGKQSGKDSDDGGKDASYPLESPGTDNSSPMLPASDANEGHEVKEALRAQMEVQSKLHLLVEAEKHLQIRQDAEQRYMAMVERACKMLADQFIGNTILDSDSQKLQGLENRAPTSSLVDSLGFCSLPGSMVGGMHVSEVPHILQPQGVDYSTESCLTSLESLRGLALEGSPGGTKKRMLSLDSMVVPLIWSETNMRTQGFHLAQVNPQGITRYGM* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1040 307 Gene3D - 38 96 - -
Lja5g1040 307 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 2 307 IPR044848 GO:0003700
Lja5g1040 307 SUPERFAMILY Homeodomain-like 39 95 IPR009057 -
Lja5g1040 307 Pfam Myb-like DNA-binding domain 42 92 IPR001005 -
Lja5g1040 307 Pfam MYB-CC type transfactor, LHEQLE motif 134 179 IPR025756 -
Lja5g1040 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 36 96 IPR017930 -
Lja5g1040 307 MobiDBLite consensus disorder prediction 94 128 - -
Lja5g1040 307 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 39 94 IPR006447 GO:0003677
Lja5g1040 307 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 2 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1040 Lja-Chr5 10561521 10564712 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1040 1 208 G2-like Transcription Factor Family AT3G24120 52.995 3.97e-66 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lja5g1040 Myb_DNA-binding 7.7e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1040 - - gmx:100779871 482.256