Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1038 ATGGAAGCACCAGAGGAACTCTCTTTGGGCTCCAAAGAGCACACCAACATTGTCAAAGGGAAAAGAACCAAAAGGGTAAGGCCACAATCTCCTATCCCTTTCTCCATCACTGCTAATTCTTCAACAGGAGAAGAAGGAGAAAAAGAAGATTGTTACAATGGTGTTGATGACAACAACAACAACAACAGCAACAAAGATGATGATGCCAACACCAACACCAATAACATTAACACCAGCTCCCCCACCACTTCTTATGCAGGGTTATCATCACAAGAAGAAGAGGAGGACATGGCCAATTGCTTGATCCTTCTGGCTCAAGGACAAGCCAAGGAATCCCCAAAACACACTCCTCCTGAGGAAGATGTTGGCATGAACTACACAAAGTACAGCAGTAGGAAATTCATGGAAGCTGCAGCTTTGGATTCTGGGAAAGCAGGGTTCTATGTTTATGAATGCAAGACATGTAACAGGACATTCCCTTCATTTCAAGCACTTGGTGGACACAGGGCTAGTCACAAGAAGCCTAAGGCCATGGCTGCTGCTGCAATGGCCCTTGGAAATCAAGAGAAAAAGCAACTCTTTTTGTCATCAGATGAGGAAGAGTTTCAATTCAAGGCCAATAAGTCACTTTCTCTTCAATTGAATAGCAGGGGAAATTTGTACAGCAACAACAACAACAAGTCCAAGGTGCATGAGTGCTCAATTTGTGGTGCTGAATTCACATCAGGGCAGGCGCTTGGCGGCCATATGCGGCGCCACCGGGGACCGGTAGGGACTAACACCACACTTTCCTTGACACCAATGGTTTTGGAACCAGAACAAGATCAACCTAGAAAGAAGAGGAATGTGTTGAATTTGGATTTGGATCTCAACCTGCCTGCACCAGAAGATGATCAAAGAGAATCCAAGTTTGCCTTTGGATCCAAGCAACAACAACAACAACATGGACAGAAACAACAGCAACAACATCAGCAGCAGCATCAACAACATCAGCAGCAGCATCAACAACAAGCAGGTCTTGTCTTTCCCGCCCCAGCTTTGGTGGATTGTCATTACTGA 1059 0.4533 MEAPEELSLGSKEHTNIVKGKRTKRVRPQSPIPFSITANSSTGEEGEKEDCYNGVDDNNNNNSNKDDDANTNTNNINTSSPTTSYAGLSSQEEEEDMANCLILLAQGQAKESPKHTPPEEDVGMNYTKYSSRKFMEAAALDSGKAGFYVYECKTCNRTFPSFQALGGHRASHKKPKAMAAAAMALGNQEKKQLFLSSDEEEFQFKANKSLSLQLNSRGNLYSNNNNKSKVHECSICGAEFTSGQALGGHMRRHRGPVGTNTTLSLTPMVLEPEQDQPRKKRNVLNLDLDLNLPAPEDDQRESKFAFGSKQQQQQHGQKQQQQHQQQHQQHQQQHQQQAGLVFPAPALVDCHY* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1038 352 ProSitePatterns Zinc finger C2H2 type domain signature. 152 172 IPR013087 -
Lja5g1038 352 ProSiteProfiles Zinc finger C2H2 type domain profile. 231 258 IPR013087 -
Lja5g1038 352 MobiDBLite consensus disorder prediction 55 90 - -
Lja5g1038 352 Pfam C2H2-type zinc finger 230 255 - -
Lja5g1038 352 Pfam C2H2-type zinc finger 149 175 - -
Lja5g1038 352 MobiDBLite consensus disorder prediction 291 337 - -
Lja5g1038 352 SUPERFAMILY beta-beta-alpha zinc fingers 149 253 IPR036236 -
Lja5g1038 352 ProSiteProfiles Zinc finger C2H2 type domain profile. 150 177 IPR013087 -
Lja5g1038 352 ProSitePatterns Zinc finger C2H2 type domain signature. 233 253 IPR013087 -
Lja5g1038 352 Gene3D Classic Zinc Finger 148 253 - -
Lja5g1038 352 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 11 352 - -
Lja5g1038 352 SMART c2h2final6 150 172 IPR013087 -
Lja5g1038 352 SMART c2h2final6 231 253 IPR013087 -
Lja5g1038 352 MobiDBLite consensus disorder prediction 305 337 - -
Lja5g1038 352 MobiDBLite consensus disorder prediction 1 91 - -
Lja5g1038 352 PANTHER ZINC FINGER PROTEIN ZAT5 11 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1038 Lja-Chr5 10534347 10535561 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1038 1 352 C2H2 Transcription Factor Family AT5G04390 43.544 1.44e-88 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja5g1038 zf-C2H2_6 1.3e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1038 - - lja:Lj5g3v1698900.1 527.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1038 5 10534347 10535561 Lja1g0801 1 7753281 7754424 ECH
Lja1g0801 1 7753281 7754424 Lja5g1038 5 10534347 10535561 ECH
Lja3g0912 3 9302024 9303694 Lja5g1038 5 10534347 10535561 ECH
Lja3g3662 3 72717791 72718988 Lja5g1038 5 10534347 10535561 ECH
Lja5g1038 5 10534347 10535561 Lja5g1038 5 10534347 10535561 ECH