Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1035 ATGGGTCGCGAAACGCAGCTGATTCTAGCCCCACCTACCACCACCACCACCACCACTGTGGAACCCCAACCTCCGCCGCCACCACCACCACTGGCAGCTCCTTCTGCATCAGCTTCAGCTGCTGCTGTTGCTGCTCCTCCTACCTCTCTTGCTCCTGGGTTCAGGTTCCACCCTACTGATGAGGAGCTTGTTATCTATTACCTCAAGCGCAAGGTTTGTGGGAAAAACTTTAGATTCGATGCCATATCTGAGGTTGACATCTACAAGAGTGAACCCTGGGACCTTGCGGATAAGTCTAGGTTGAAGACCAGGGACCAGGAATGGTACTTTTTCAGTGCCTTGGACAAGAAGTATGGGAATGGTGGCAGAATGAACCGGGCCACGAGCCAAGGGTACTGGAAAGCAACTGGGAATGATCGCCCGGTGAGGCATGGTCAGAGGACTGTGGGGTTGAAGAAGACTTTGGTGTTTCATAGTGGCAGGGCACCGGATGGTAAGAGGACAAATTGGGTCATGCATGAGTACAGGATTGTGGAGGAAGAGTTGGAGAGGGTTGGGACTGGATCCTCTCAGCCTCAGGATGCATATGTCTTGTGTAGAGTATTTCACAAAAATAACATAGGACCACCAAATGGGCAACGGTATGCACCCTTCATTGAGGAAGAGTGGGATGATGATGCATCGGGATTGGTTCCTGGGGTAGAGCCTGTGGGTGACGGTTCTGTTGCTCGCCATGCACGTGTTGAAGGCAATGGTGTTTCATGCAGTGAAGGGAGAAATGATGTTGTGCAGGACACTCAATCTATCAATAAAGCTCCATTTGATGTGACCAACCTTCCCATTGAAACTCAAAATCTTATAGCTGTGTGCAAGAGGGCGAAGATGGATGAGTTCCCATCACCAGAAAAAGACGATTCTAAGCAGATGCAAATGGATGAGTACCCATCCTCCCAAACTGATAATCCAAAACCCTTCTCTCAAATTTACAAAAGAAGGCGCTATAACTTGAACTCCAACCATTCTCATGCTTCTGGAGATTCAGTCCAAACCAACCAGGGTCCATGCTCATCCACCATAACCACCGCTGCAACCACACTCCCAACAACAACCACCACCGAAGCAGCCACCAACCCTGCACCGAAAAAACATTTCCTGTCTGCACTGGTGGAGTATTCTCTGCTAGAATCTCTTGAATCAAAGGAAAGTCCTGTCTCGATTAAGCCAGAGGATTTGGATGCAGCACATCCGACTTGCACTAAGTTCCTCAAACAGATGCAGAGTGAGATGCAGAAGCTCAGTGTTGAAAAGGAGACTATGAGGTTCGAGTTAATGAGTACTCAAACCATGATTAAAATTCTCCAGTCTCGCAATGACGTGCTCACCAAAGAAAATGAGGAGCTGAAGAGGATGATGGGAAATCCTTAG 1425 0.4863 MGRETQLILAPPTTTTTTTVEPQPPPPPPPLAAPSASASAAAVAAPPTSLAPGFRFHPTDEELVIYYLKRKVCGKNFRFDAISEVDIYKSEPWDLADKSRLKTRDQEWYFFSALDKKYGNGGRMNRATSQGYWKATGNDRPVRHGQRTVGLKKTLVFHSGRAPDGKRTNWVMHEYRIVEEELERVGTGSSQPQDAYVLCRVFHKNNIGPPNGQRYAPFIEEEWDDDASGLVPGVEPVGDGSVARHARVEGNGVSCSEGRNDVVQDTQSINKAPFDVTNLPIETQNLIAVCKRAKMDEFPSPEKDDSKQMQMDEYPSSQTDNPKPFSQIYKRRRYNLNSNHSHASGDSVQTNQGPCSSTITTAATTLPTTTTTEAATNPAPKKHFLSALVEYSLLESLESKESPVSIKPEDLDAAHPTCTKFLKQMQSEMQKLSVEKETMRFELMSTQTMIKILQSRNDVLTKENEELKRMMGNP* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1035 474 ProSiteProfiles NAC domain profile. 50 204 IPR003441 GO:0003677|GO:0006355
Lja5g1035 474 MobiDBLite consensus disorder prediction 297 324 - -
Lja5g1035 474 Pfam No apical meristem (NAM) protein 52 177 IPR003441 GO:0003677|GO:0006355
Lja5g1035 474 SUPERFAMILY NAC domain 41 205 IPR036093 GO:0003677|GO:0006355
Lja5g1035 474 MobiDBLite consensus disorder prediction 18 34 - -
Lja5g1035 474 MobiDBLite consensus disorder prediction 337 359 - -
Lja5g1035 474 Gene3D NAC domain 59 207 IPR036093 GO:0003677|GO:0006355
Lja5g1035 474 Coils Coil 422 442 - -
Lja5g1035 474 Coils Coil 450 470 - -
Lja5g1035 474 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 42 471 - -
Lja5g1035 474 MobiDBLite consensus disorder prediction 1 39 - -
Lja5g1035 474 PANTHER NAC DOMAIN-CONTAINING PROTEIN 78-LIKE 42 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1035 Lja-Chr5 10501642 10507514 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1035 34 469 NAC Transcription Factor Family AT3G10480 43.810 4.50e-113 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lja5g1035 NAM 4.5e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1035 - - gmx:100808783 670.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1035 5 10501642 10507514 Lja5g1035 5 10501642 10507514 ECH