Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1034 ATGTCAAGCAATCTCTCACCTGGCTTCCGATTCCACCCCACCGACGAAGAACTCGTCGGCTTCTACCTCAAGCGCCGCGTCACCGGTAGACTCTTCCACGGCGACCCCATCGGCATCGTCGATGTCTACAAATACGAACCCTGGGACCTTCCATGTTTGTCGAAGATGAAGACGAGGGATTTGGAGTGGTACTTCTACTCTGGGCTTGACAAGAAGTATGGGAAGGGTTCGTCCAGGACGAACCGCGCGACTGAGAAGGGTTATTGGAAGACTACCGGGAAGGATCGTCCGGTTAATCACGCTAACCGCACCGTCGGGATGAAGAAGACGCTTGTTTATCACTTCGGTCGCGCTCCGACCGGGGCGCGGACTAACTGGGTTATGCATGAGTATAGGTCTGTTGATGAGGTGCTGGCTCAATCTGGAGTAGCGCAGGATGCTTATGTGCTGTGTAGGATTTTCGAGAAGAGTGGCGCGGGGCCCAAGAATGGAGAGAAGTATGGGGCTCCTTTGATAGAGGAGGAATGGGACAATTTTGATATGATTAGTCCCTTGGCTGCTTTTGGTGATGAGTATATAAATGAAGTGCCTGATGTGGATGGTTTGTTGGAAACAAAGGACCTCGATCAGGATCAGGACCAGAAGCACGTGGCTCCCTTGGCCCCTTTGGCGGTTGTGGATGATAAGCTTATGAATGGAGTGCTTGATGATGGTGATTTTATGGAAACAAACGACCTCGATAAGAAGCTTGATATGCCGGCTGTTGCGATTGGGAGTGCTGATTTTCCTTCAAACTTCCATTACGGGGAGTGTAGTAGCCTTCCTGAATATTCCCAAGCATTCATCAGTGATCGGAAGCTATTGGAAGACACTATGGGAAATTCTGGGCCTGAAAATCACCAGCCTTTTAATATGGCTCAGCAATATGGTGCTGACACCAATGCAGGGAATGATGGAGGAGACACTGGTGAGCTGAGCTATGATGAAAAGCCTCTGAATTTCGATTGTCTTGATAGTCTAGCTCAAGGCTTGAATCCCAATTGGTCTCCTCTGAATCTTGATGAAATCCTGGAAACCGATGATCTTGCAAATTTGGCAGAGGGTAATCCTGCCGAGGCAGATTCTTCTGTTATTGGCATGGTAGATGAGTATCTTTCATACACTGAGGATGATATTTACAAGTATATATGTTTTGATTCTCCTGGGAATGAAGGGAGTGAAATCGCCATTCCTGACCAAGGACCACAGCCCATCCAGCAGAATGTGGAGGTCGAAACCCGTGATATTTCCGTGGCAAGCAAACCTGTTTTTGAAGCACAATCTAGCAATGAAGCTTCTTTAAAGCAGCATGTTCATCAGACCTCCAAGTTTGTATCAGAAGATTCAAATCCAATTGTAAAGCATGCCCATAAATTGTTGGCCAGCATGCCTGCTCCACCTGCATTTGCTTCAGAGTTTCCTACTAAGGGGTTTGCTCTTGGGCTTCATCCTGGTGCCCAGTCTTCAAATACCACCCATATAGCAGGTATGATCAGCATAACAGACATTACTTTAAGAGGCAATGCGATGGATTGGATGGTGGGCAAGAATGGAGGATTTAATGCCACCATAATGTCTTCCGGGTTTTCTCAATCTGACTTTAACTCTGATTCTTTGATGCCTATTTCTGACTTGGTCTCTAGCAAGACTACATGTGTGTTGTCACATGGCTGTTTATACTTGATGGGGTTTTCGGTTCTGATTCTCTCACTGAGTTTCAAGATTGGAAGCTACATGTATACTGCTAAATGA 1791 0.4679 MSSNLSPGFRFHPTDEELVGFYLKRRVTGRLFHGDPIGIVDVYKYEPWDLPCLSKMKTRDLEWYFYSGLDKKYGKGSSRTNRATEKGYWKTTGKDRPVNHANRTVGMKKTLVYHFGRAPTGARTNWVMHEYRSVDEVLAQSGVAQDAYVLCRIFEKSGAGPKNGEKYGAPLIEEEWDNFDMISPLAAFGDEYINEVPDVDGLLETKDLDQDQDQKHVAPLAPLAVVDDKLMNGVLDDGDFMETNDLDKKLDMPAVAIGSADFPSNFHYGECSSLPEYSQAFISDRKLLEDTMGNSGPENHQPFNMAQQYGADTNAGNDGGDTGELSYDEKPLNFDCLDSLAQGLNPNWSPLNLDEILETDDLANLAEGNPAEADSSVIGMVDEYLSYTEDDIYKYICFDSPGNEGSEIAIPDQGPQPIQQNVEVETRDISVASKPVFEAQSSNEASLKQHVHQTSKFVSEDSNPIVKHAHKLLASMPAPPAFASEFPTKGFALGLHPGAQSSNTTHIAGMISITDITLRGNAMDWMVGKNGGFNATIMSSGFSQSDFNSDSLMPISDLVSSKTTCVLSHGCLYLMGFSVLILSLSFKIGSYMYTAK* 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1034 596 PANTHER NAC DOMAIN-CONTAINING PROTEIN 53-LIKE 4 188 - -
Lja5g1034 596 Gene3D NAC domain 14 159 IPR036093 GO:0003677|GO:0006355
Lja5g1034 596 ProSiteProfiles NAC domain profile. 5 156 IPR003441 GO:0003677|GO:0006355
Lja5g1034 596 Pfam No apical meristem (NAM) protein 7 132 IPR003441 GO:0003677|GO:0006355
Lja5g1034 596 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 332 591 - -
Lja5g1034 596 SUPERFAMILY NAC domain 3 156 IPR036093 GO:0003677|GO:0006355
Lja5g1034 596 PANTHER NAC DOMAIN-CONTAINING PROTEIN 53-LIKE 332 591 - -
Lja5g1034 596 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1034 Lja-Chr5 10494287 10497895 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1034 344 588 NAC Transcription Factor Family AT5G04410 32.806 1.45e-17 84.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lja5g1034 NAM 2.1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1034 - - lja:Lj5g3v1698980.1 1211.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1034 5 10494287 10497895 Lja5g1034 5 10494287 10497895 ECH