Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1027 ATGACAGATATTCAGCCGCTACAGCAGAAGCCTGAACCTGCTGATGCCCATGCCGAATTTGAGCGCGGGCTGGAGGAGTTTATGCGCGGCCACTTGGATGATTGTATGTCGTTTGCTTCGTGTAGCTCGTCTCGTGTGCATGATGATGAGGATGATGAGGGTGATCAGCTTGTTCGGAGGAGACGGAGGTCTGATCTTGAAGGGGATGATTTAGCGGAGTCGTCAGCAGCGCGGAGGCGCCATTCGCGGATTTTGAGCAGGTGGGCTGCCAGGCAGGCGCAGGAGATGATAACTACCATTGAGAGGAGGAATCGAGAGTCTGAGTTAATGGCACTTGCAGGGTTACATACGGTGTCCATGTTGGACTCCTCTTTTTTGAGAGGATCACAGTCTCCTACTTCTGGCCAGGAGGGTGCTGTGGAGAGGCCAAGCACCCAGGCATCTGCTATTTTGCAAATGTGGCGTGAATTGGAGGATGAACATGTGATAAATCGGGCACGTGAAAGGGTGAGGGAACGGTTGCGACAGCAAAGGAGTTCTGACTCTAATGCCAATGTTTCGAGTACTATGTCTGACAGTCGAGGCAGTGAGAATCAAGGGAGTTTGGGGGATGCAAGTGAAAGCGAAAATGATTATGGTACTTGGTCGCATGATCAGATTGGATCACGGAATGGACATGGGAATCATAATGGGTCTAGCAGGGAGCAATCTCCTGATCTCGGCGAAGTTGAGAGGGAGAGAGTTAGACAGATTGTTCGGGGATGGATGGAAAGTGGTATTAGTGATCATTCATCTAATGTGAGTCAGAGAAACAATAATCGCAGAGCAGAATGGCTTGGAGAAACTGAGCGAGAGAGGGTAAGAATTGTCAGGGAATGGGTGCAAATGACCAGTCAGCAGAGAGGATCACGTGGGAGCCGGAGGGATGCTCAAGTAAGTGAACCTGCTCAACATGATCGAGCCCGTGATGGGGTAGCTGATCATGATGATGGTCAGCCAGAGCATGTTCGGCGGGACATGTTGAGGTTACGGGGAAGACAGGCTCTAGTTGATTTGCTTGTGAGGGTAGAAAGGGAAAGACAAAGAGAGCTGCAGGGCTTGTTGGAGCATCGAGCTGTTTCTGATTTTGCTCATCGCAACCGTATTCAGTCATTGCTCAGAGGTAGGTTCCTCCGAAATGAAAGACCTGTTGAAGATGAGAGGCCTCCGTCTGGGGCTGCAAGTGAATTAGTTCAGTTAAGACAACGGCACACAGTCTCTGGTATAAGGGAGGGGTTTCGTTCAAGATTAGAAAATATTGTTCGTGGTCAATCAGGCACCAGTCCTGATACCACATCAAATAGTAACATCGATGAAACGAGAAACGATGAAAACCAAACAAGCAATCTGATACGTGCTCAACAAGACAATTATGAAGAAGAGCAGATTGGGAGCCTGGAAACTGATGTGCATGAGTTTCCTAATCAAACGGGAACTACGGATAGTAGCACAGGTGAAACTATTACTTGGCAAGAGTCTAGTAATCAAGGAGGGAATTGGCAGGAACAAATTGCTGAAGATGGGGGAGGTAGCTGGCAGCAGAGAACTTATGGTCAATTCAATCAGCCGAGAGACCGAAGGGCAGTTAGAGATTGGCCACTGGAAACTTCCAGAGATCAAGCGGGCGAAGATCCTCCTCATCCACGTGAACCTCAAAGAGTTTGGCATGAGGATAGCACAAGGGAAGCTGTTGGTAATTGGTCTGAAGGACCTTCCGGAGCTTCAAGGAATCGCCGTGGTGTTCCCTTTAGAAGGTTCAATAGATTTCATCCCCCTGATGATGACAATGTGTACAGTATGGAGCTTAGAGAACTTCTGAGCAGGAGAAGTGTTTCTAACCTTCTTCGCAGTGGTTTCCGTGAAAGTCTGGATCAACTAATACAGTCATATGTTGAAAGGCAAGGTCGTGCACCAATTGACTGGGATTTGCATCGGAACTTGCCAACACCGACCCCTGCCTCACCTGAACGGGAACCTGATCAGCAGGGTGATGAACATAATGAGGGTCAGCATGAAACCATGAACAGACCTTCACTGGTGTTGCCTTCTCCTCCAGTACCTCCGCCACAACCACTTTGGCACCAAGATTTGCATCAAACTGGGTGGTCTCGTCATAGCATGCATCGATCTGAAATGGAATGGGAGATAATGAATGATTTAAGATCAGATATGGCAAGACTTCAGCAAGGGATGAATCACATGCAGAGGATGTTGGAGGCCTGCATGGACATGCAACTGGAGTTGCAGCGTTCTGTAAGACAGGAGGTCTCTGCAGCTCTTAACCGCTCAGCTGGTGAAAATGGATCGGTTGCTGAGACATCTGATGATGGGTCTAAATGGGGGCATGTGAAAAAAGGAACTTGCTGTGTTTGTTGTGATAGCCATATTGATTCGCTTTTGTACAGATGCGGACACATGTGCACGTGTTCAAAATGTGCCAATGAGTTAATTCGTGGAGGCGGTAAGTGTCCTTTATGCCGAGCACCAATTGTTGAGGTGGTCCGAGCATATTCCATACTGTAA 2562 0.4836 MTDIQPLQQKPEPADAHAEFERGLEEFMRGHLDDCMSFASCSSSRVHDDEDDEGDQLVRRRRRSDLEGDDLAESSAARRRHSRILSRWAARQAQEMITTIERRNRESELMALAGLHTVSMLDSSFLRGSQSPTSGQEGAVERPSTQASAILQMWRELEDEHVINRARERVRERLRQQRSSDSNANVSSTMSDSRGSENQGSLGDASESENDYGTWSHDQIGSRNGHGNHNGSSREQSPDLGEVERERVRQIVRGWMESGISDHSSNVSQRNNNRRAEWLGETERERVRIVREWVQMTSQQRGSRGSRRDAQVSEPAQHDRARDGVADHDDGQPEHVRRDMLRLRGRQALVDLLVRVERERQRELQGLLEHRAVSDFAHRNRIQSLLRGRFLRNERPVEDERPPSGAASELVQLRQRHTVSGIREGFRSRLENIVRGQSGTSPDTTSNSNIDETRNDENQTSNLIRAQQDNYEEEQIGSLETDVHEFPNQTGTTDSSTGETITWQESSNQGGNWQEQIAEDGGGSWQQRTYGQFNQPRDRRAVRDWPLETSRDQAGEDPPHPREPQRVWHEDSTREAVGNWSEGPSGASRNRRGVPFRRFNRFHPPDDDNVYSMELRELLSRRSVSNLLRSGFRESLDQLIQSYVERQGRAPIDWDLHRNLPTPTPASPEREPDQQGDEHNEGQHETMNRPSLVLPSPPVPPPQPLWHQDLHQTGWSRHSMHRSEMEWEIMNDLRSDMARLQQGMNHMQRMLEACMDMQLELQRSVRQEVSAALNRSAGENGSVAETSDDGSKWGHVKKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELIRGGGKCPLCRAPIVEVVRAYSIL* 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1027 853 CDD mRING-HC-C3HC5_NEU1 800 840 - -
Lja5g1027 853 ProSiteProfiles Zinc finger RING-type profile. 801 840 IPR001841 -
Lja5g1027 853 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 853 - -
Lja5g1027 853 MobiDBLite consensus disorder prediction 307 334 - -
Lja5g1027 853 MobiDBLite consensus disorder prediction 654 699 - -
Lja5g1027 853 MobiDBLite consensus disorder prediction 173 244 - -
Lja5g1027 853 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 779 851 IPR013083 -
Lja5g1027 853 MobiDBLite consensus disorder prediction 479 592 - -
Lja5g1027 853 MobiDBLite consensus disorder prediction 41 78 - -
Lja5g1027 853 MobiDBLite consensus disorder prediction 44 78 - -
Lja5g1027 853 SUPERFAMILY RING/U-box 800 846 - -
Lja5g1027 853 MobiDBLite consensus disorder prediction 179 237 - -
Lja5g1027 853 MobiDBLite consensus disorder prediction 430 462 - -
Lja5g1027 853 MobiDBLite consensus disorder prediction 433 462 - -
Lja5g1027 853 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 1 853 - -
Lja5g1027 853 MobiDBLite consensus disorder prediction 537 576 - -
Lja5g1027 853 MobiDBLite consensus disorder prediction 296 334 - -
Lja5g1027 853 MobiDBLite consensus disorder prediction 671 685 - -
Lja5g1027 853 MobiDBLite consensus disorder prediction 482 534 - -
Lja5g1027 853 Coils Coil 730 750 - -
Lja5g1027 853 Pfam Zinc finger, C3HC4 type (RING finger) 798 845 - -
Lja5g1027 853 MobiDBLite consensus disorder prediction 125 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1027 Lja-Chr5 10417006 10423974 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1027 801 847 C3H Transcription Factor Family AT3G06140 42.553 1.50e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1027 - - gmx:100784174 1418.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1027 5 10417006 10423974 Lja5g1027 5 10417006 10423974 ECH