Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1011 ATGAACTGTCTTCAGAATCTTCCTAGATCCTCTGTTCTTCCCTTCGAATCAGTTGTTGCGCGCCACCACAAGAATCTCCCATTCTCTACACTTTCCATGGGAATCTTCAATAGTTCTCATCATAATCGAAGCATGGCAATCAAGTCCACTTCTGGTTCTGTACCCAGTGCAGAGACAAGTAGCTCCGATGTGAAGGAGGAAAAGTCCGAGACATATAGTCATGACATGACAGCAGCCATGGGTGCTGTTTTGACTTATAGGCATGAATTAGGAATGAACTACAACTTCATCCGTCCAGACTTAATTGTGGGATCATGCCTACAGACTCCTGAAGATGTTGATAAACTGAGGAAAATCGGAGTGAAAACTATATTTTGCTTGCAACAAAATCCAGACTTAGAATATTTCGGAGTTGATATCAAAGCCATACAAGAATATGCTAAGACATTCAATGACATTCAACACTTGCGTGCTGAGATAAGGGACTTCGATGCATTTGATTTACGGATGCGGCTTCCAGCTGTAGTTAGCAAATTATACAAGGCAGTTACCTCCAATGGAGGGGTGACATATATACATTGCACTGCTGGACTTGGAAGAGCTCCGGCTGTTGCGTTGGCATATATGTTTTGGGTTCTGGGTTATAAACTTGATGAGGCTAATAGACTACTTCAGAGCAAAAGGTCGTGCTTTCCAAAACTGGATGCCATAAAAAGTGCAACTGCTGATATTCTTACAGGCCTCAGTAAGAAGCCTGTCACTTTGTCATGGGAACACAGAAATTGCTCTAGAGTGGAGATTTCTGGACTTGATATTGGATGGGGGCAGAGAATGCCTCTAAATTTTGATGACAAACGTGGTTCGTGGTTTCTTAACAGGGAATTACCTGAAGGACGGTACGAGTACAAGTACATTGTTGATGGGGAATGGACATGCAATAAGGATGAGCTTGTAACCTCTCCCAACAAAGACGGCCACGTCAACAATTTTGTTCAAGTCCTTGATGGTACGAACGGTGCTAATGCCTCCCTTCGGGAGAGATTGACTGGTGATGATCCTGATCTCACAAAGGATGAACGCCTAAGAATAAAAGAGTTTCTTGAAGCTTTCCCTGATGAGGATCTGTGA 1128 0.4309 MNCLQNLPRSSVLPFESVVARHHKNLPFSTLSMGIFNSSHHNRSMAIKSTSGSVPSAETSSSDVKEEKSETYSHDMTAAMGAVLTYRHELGMNYNFIRPDLIVGSCLQTPEDVDKLRKIGVKTIFCLQQNPDLEYFGVDIKAIQEYAKTFNDIQHLRAEIRDFDAFDLRMRLPAVVSKLYKAVTSNGGVTYIHCTAGLGRAPAVALAYMFWVLGYKLDEANRLLQSKRSCFPKLDAIKSATADILTGLSKKPVTLSWEHRNCSRVEISGLDIGWGQRMPLNFDDKRGSWFLNRELPEGRYEYKYIVDGEWTCNKDELVTSPNKDGHVNNFVQVLDGTNGANASLRERLTGDDPDLTKDERLRIKEFLEAFPDEDL* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1011 375 CDD E_set_AMPKbeta_like_N 252 333 - -
Lja5g1011 375 Pfam Dual specificity phosphatase, catalytic domain 146 231 IPR000340 GO:0008138|GO:0016311
Lja5g1011 375 CDD DSP_laforin-like 92 239 IPR045204 GO:0019203|GO:0046838
Lja5g1011 375 MobiDBLite consensus disorder prediction 46 71 - -
Lja5g1011 375 SUPERFAMILY E set domains 251 334 IPR014756 -
Lja5g1011 375 Pfam Glycogen recognition site of AMP-activated protein kinase 252 334 IPR032640 -
Lja5g1011 375 Gene3D Protein tyrosine phosphatase superfamily 86 366 IPR029021 -
Lja5g1011 375 SMART dsp_5 93 243 IPR020422 GO:0006470|GO:0008138
Lja5g1011 375 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 1 373 - -
Lja5g1011 375 Gene3D Immunoglobulins 248 338 IPR013783 -
Lja5g1011 375 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 170 228 IPR000387 GO:0016311|GO:0016791
Lja5g1011 375 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 91 235 IPR029021 -
Lja5g1011 375 ProSiteProfiles Dual specificity protein phosphatase domain profile. 93 250 IPR020422 GO:0006470|GO:0008138
Lja5g1011 375 MobiDBLite consensus disorder prediction 46 60 - -
Lja5g1011 375 PANTHER PHOSPHOGLUCAN PHOSPHATASE DSP4, CHLOROPLASTIC 1 373 IPR030079 GO:0005982|GO:0007623|GO:0019203
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1011 Lja-Chr5 10278260 10286579 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1011 92 369 Protein tyrosine phosphatase (PTP) family AT3G52180 71.223 1.49e-152 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1011 - - gmx:100804010 645.195