Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1010 ATGGGCGACACCGATTCTCTTCCTCCTCCCACTGAACAAGAAATTTCCAATGAGCTAGACCTGAGAGTAAAGAAGTACCTCAGAGGAGAAGGTGCTAATTTGGAGGGTTTGAAGGATAAAAAGCTCAAGACCCAACTTACTAATAGAGAGAAATTGTATGACAAATCTGCTAAAGCTGCTGCCATGGCTGAAAAGTGGCTTATGCCAAGTGAAGGAGGTTATCTGGAGGCTGATGGTGTGGAGAATACATGGAGGATCAAACAGGAGACAATAGCTTCTGAAGTAGATATCTTAAGCTCAAGGAATCAATATGATATTGTTTTACCAGAACTTGGTCCATATACTCTGGATTTTACATCAAGTGGTCGGTATATGGCTGTTGGTGGGCGTAAAGGCCATCTGGGAATTGTGGACATGATGAGTCTGAACCTAATCAAAGAGTTTCAGGTGAGAGAAACCGTGCGTGATGTGGCATTTTTGCATAATGAGCTATTTTTTGCCGCTGCCCAGAAAAAGTACCCGTACATCTATAATCGTGAAGGTGTTGAGCTTCACTGCCTCAAGGAACATGGTTCAGTGTTAAGGCTTCAGTTTCTGGAAAACCATTTTCTCCTGGCTACTGTCAACAAATTTGGGCAGCTTCGCTATCAGGATGTTACGATGGGTACTATGGTTGGTAATTGTCGAACTGGCTCAGGACGTACAAACGTGATGCAAGTAAACCCTTTCAATGCGGTTGTTTCTTTAGGTCACTCTAGCGGTACAGTCACTATGTGGAAGCCGACTAGTTCTTCTCCTCTTGTCAAGATGCTATGTCATCGCGGGCCTGTCACAGCACTGGCATTTCACTCAAATGGCCACTTAATGGCCACTGCTGGGCAAGATAAAAAAATCAAGCTTTGGGATTTGAGGAAGTTTGAGGCTCTTCAAACGTTACCAGGCCATGCAAATACTATGGATTTCAGTCAAAAAGGCTTGCTTGCTTGCGGTACTGGTTCATTTACCCAGGTTCTGAGGGATGTTTCCGGTACACAGAAGTACTCTAAGTACATGATGCATTCCATGGCGAAGGGTTACCAGGTAGGAAGATTAGTTTTTCGACCATATGAAGATGTTCTAGCCATAGGGCATTCAATGGGGTGGTCAAGTATTCTTATTCCAGGAGCAGGGGAACCCAACTTCGATTCATGGGTTGCGAACCCGTTTGAAACGTCGAAACAGAGGAGAGAAAAGGAAGTGCGGTCTCTTCTTGATAAGCTTCCACCAGAGACAATCATGTTGGATCCCAGGAAAATTGGGTCGGTGAAACTGACAAAAAGAGAGAAGCCAAGCATGCAGGAGAAGGAGGCTGAGATGGAAGCTGCTGTTGAAGCTGTTAAGAGCAAGAAACTGAAGAAGAAAACAAAAGGAAGAAATAAGCCTGGTAAAGTGGCTCACAAAAAGCAAGAGGCAATTGGTAGAGCGAAAAGACCTTTCGTGGAGCAGAAAATTCAGGAGGAGGAAAACATATCAAAAAAGAAACAGAAAACTACTGAGGGAGTTGAATTGCCAGTATCTTTACAGCGGTTTGCTCGTAAAAAACCATCATCATAA 1593 0.4388 MGDTDSLPPPTEQEISNELDLRVKKYLRGEGANLEGLKDKKLKTQLTNREKLYDKSAKAAAMAEKWLMPSEGGYLEADGVENTWRIKQETIASEVDILSSRNQYDIVLPELGPYTLDFTSSGRYMAVGGRKGHLGIVDMMSLNLIKEFQVRETVRDVAFLHNELFFAAAQKKYPYIYNREGVELHCLKEHGSVLRLQFLENHFLLATVNKFGQLRYQDVTMGTMVGNCRTGSGRTNVMQVNPFNAVVSLGHSSGTVTMWKPTSSSPLVKMLCHRGPVTALAFHSNGHLMATAGQDKKIKLWDLRKFEALQTLPGHANTMDFSQKGLLACGTGSFTQVLRDVSGTQKYSKYMMHSMAKGYQVGRLVFRPYEDVLAIGHSMGWSSILIPGAGEPNFDSWVANPFETSKQRREKEVRSLLDKLPPETIMLDPRKIGSVKLTKREKPSMQEKEAEMEAAVEAVKSKKLKKKTKGRNKPGKVAHKKQEAIGRAKRPFVEQKIQEEENISKKKQKTTEGVELPVSLQRFARKKPSS* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1010 530 MobiDBLite consensus disorder prediction 477 512 - -
Lja5g1010 530 Gene3D - 84 236 IPR015943 GO:0005515
Lja5g1010 530 MobiDBLite consensus disorder prediction 462 476 - -
Lja5g1010 530 Gene3D - 237 386 IPR015943 GO:0005515
Lja5g1010 530 Pfam WD domain, G-beta repeat 272 302 IPR001680 GO:0005515
Lja5g1010 530 ProSitePatterns Trp-Asp (WD) repeats signature. 289 303 IPR019775 -
Lja5g1010 530 Pfam BING4CT (NUC141) domain 350 428 IPR012952 -
Lja5g1010 530 Coils Coil 445 465 - -
Lja5g1010 530 SMART WD40_4 221 260 IPR001680 GO:0005515
Lja5g1010 530 SMART WD40_4 99 138 IPR001680 GO:0005515
Lja5g1010 530 SMART WD40_4 305 340 IPR001680 GO:0005515
Lja5g1010 530 SMART WD40_4 141 178 IPR001680 GO:0005515
Lja5g1010 530 SMART WD40_4 263 302 IPR001680 GO:0005515
Lja5g1010 530 SUPERFAMILY WD40 repeat-like 111 378 IPR036322 GO:0005515
Lja5g1010 530 SMART BING4CT_2 349 429 IPR012952 -
Lja5g1010 530 ProSiteProfiles Trp-Asp (WD) repeats profile. 270 311 IPR001680 GO:0005515
Lja5g1010 530 PANTHER WD-REPEAT PROTEIN BING4 7 526 IPR040315 -
Lja5g1010 530 MobiDBLite consensus disorder prediction 458 530 - -
Lja5g1010 530 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 270 304 - -
Lja5g1010 530 PANTHER BNAANNG36350D PROTEIN 7 526 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1010 112 325 U-box Gene Family AT2G33340 24.336 1.45e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1010 K14768 - gmx:100802940 864.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1010 5 10270912 10277068 Lja5g1010 5 10270912 10277068 ECH