Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1006 CTCAACTCTTTTATATTAAACAGCATGCCAGTTCTTGTGACAGTGACCACATTTGGAATGTTTACTTTACTTGGCGGAGAATTGACACCTTCAAGGGCATTTACCTCGCTATCTCTGTTTTCAGTTTTGCGGTTTCCTTTATATATGCTTCCAAGTTTACTAAGTCAGATAGCAAATGCAAAGGTCTCCTTGCAGCGTTTGGAGGAACTGTTCTTGGCTGAGGAGCGAAATTTAAAGCAAAATCCGCCTATTGTAGCCATCTCAATTAGTAATGGATACTTTTCATGGGATCCTAAGGCAGAGAAGCCCACATTATCAAATATCAATTTGGAAATACCAATTGGCAGCTTAGTTGCAATTATTGGTGGTACTGGAGAAGGGAAAACATCACTTATTTCAGCAATGACTGGAGAGCTACCTCCATTAGCAGACGCAAATGCTACAATCAGAGGCACTGTTGCTTATGTTCCTCAGGTTTCATGGATTTACAATGCTACAGTTCGTGAAAATATATTATTTGGATCAAAATTCGAACATGAAAGATATTGGAGGGCTATCGACGTCGCTGCTTTACATCATGATCTCAACTTCCTACCTGGACGTGATTTAACAGAGATTGGAGAAAGAGGAGTGAATATTAGTGGTGGACAAAAGCAAAGAGTTTCCTTAGCTAGGGCTGTATACTCGAATTCGGATGTGTATATATTTGATGATCCTTTGAGTGCTCTTGATGCTCATGTTGCACAGGAGGTTTTCAGCAACTGTATAAAGGAAGGGCTGCGAGGAAAAACCAGGGTTCTTGTCACCAACCAACTACACTTTCTCCCTCAGGTGGATAAAATTATTCTGGTTAGTGAAGGCATGATTAAGGAGGAGGGAACCTTTGAGGAGCTGTCAAAATGTAGGCATCTATTTCAGAAACTAATGGAAAACGCAGGGAAAATGGAACATCAAGCAGATAGTAACGAAGATAGAGATAGTCATGATAACGATTTACCCTTAAACAATGAGGCAATTGTAGAGTTACCAAATGGTGCAAGCTACGAAAAGAAGGGAAAATTACAAAAATCAGTACTTGTTAAGAAAGAAGAGTGGGAGACAGGTGTGGTTAGCTGGAAAGTTATAACGAGATACAAATCTGCTCTGGGAGGACTGTGGGTAGTTCTCATACTCTTTGGATGCTATACGTTAACAGAAGTTCTTCGAATTTCAAGTAGCACATGGTTAAGCGTGTGGACATCTCAAGATTCTGCTGCAGCTGATGAAACAGAATATTTTCTTTTCGTCTATGCACTTTTCTCATTTGGACAGAGCATAGCTCGAGAGGTGAAGCGCTTGGATTCCATTACAAGATCTCCTGTTTATGCACATTTTGGAGAATCATTGAATGGATTGTCAAGCATTCGCGCTTACAAAGCATATGATAGGATGGCACAGATCAATGGAAAATTCATGGATAACAACATAAGATTCACTCTTGTCAACATTAGTTCGAACCGGTGGTTGACCATAAGGTTAGAATCATTAGGAGGCCTCATGATTTGGTTGATAGCAACATTCGCTGTCCTGCAAAATGGAAGAGCTGAAAACAAGGCCATGATTGCGTCTTCAATGGGCCTACTTCTCAGTTACACTTTGAACATAACAAATCTCTTGAGTGGTGCCCTCAGACAAGCAAGTAGAGCTGAGAACAGTTTAAATGCGGTTGAGCGCGTTGACACCTATATAAATTTAGAATCCGAGGCTCCAGGTATAATTGAGGAAAACCGTCCACCACCAGGATGGCCGACAACTGGATCGATTGAGTTTGAGAATGTTGTTCTCACATACAGGCCTGAACTTCCTCCAGTCCTGCATGGAGTGTCTTTCACAGTATGTCCAACTGAGAAGATAGGGGTAGTTGGAAGAACTGGTGCAGGAAAGTCTAGCACGCTTAATGCGTTATTCCGGATTGTGGAACTACAAAGAGGAAGAATCACTATTGATGGTTGTGATGTTTCGACGATTGGACTAGAAGATCTGCGAAGAGTTCTCACCATCATACCGCAATCGCCAGTTCTATTCTCTGGAACTGTTCGCTTCAATCTTGATCCATTTAATGAACACAATGATGCTGACCTATGGGAATCTTTAGAAAGGGCGCATTTGAAGGATGTAATTAGAAGAAATCCACTTGGCCTAGATGCTCACGTTTCAGAGGGAGGAGACAATTTCAGTGTTGGACAGAGGCAACTCATAAGTCTAGCAAGAGCATTGCTACGACGATCAAAGGTTCTTGTCCTGGATGAAGCTACTGCTGCTGTAGATGTTAGAACAGATGCCCTTATCCAGAAAACTATCCGACAAGAATTCCAGTCTTGCACCATGCTGATCATTGCACACAGATTAAATACCATTATTGACTGCGATCGGATTCTGTTGCTTGATGCTGGCCGGGTTCTTGAATATGGTTCACCAGAGGAGCTCTTAAAAAATGAAGAAAGTGCATTCAATAAGATGGTTCAAAGCACTGGACCTGCAAATGCTGAGTATCTATGTAGCCTAGTGTTTGGAAGGACAAAGAACAATTCTGGTGAATATAACAAGGGGCAAGAAAGCCACACAAGACAGTTAGTTTTTACCCATTGGGCTGCTGCTACCAAGTTTGCCATAGCTTCTACCCTTTCTTCTTTACACAATAACCTTCAAAAGCCTAGTTCTAAGGAGAATAAAGATTTCCTTGATGAAACAAAGGATGCAGTGACAACACTTCAGGAAGTTCTAGAGGGGAAGCATGATGAAGCCATAGAGGAGACACTGACTAAATACCATGTTCCAACATATAGATGGTGGTCCACCCTCCATCAAGTTATTGAAGGTCTTGATATCTTGATCAGGTTGCCTCCAGACAACATTCAACAATTAGAACCTGATTTTGAAGGGAGATCGTTTGACTAA 2937 0.4147 LNSFILNSMPVLVTVTTFGMFTLLGGELTPSRAFTSLSLFSVLRFPLYMLPSLLSQIANAKVSLQRLEELFLAEERNLKQNPPIVAISISNGYFSWDPKAEKPTLSNINLEIPIGSLVAIIGGTGEGKTSLISAMTGELPPLADANATIRGTVAYVPQVSWIYNATVRENILFGSKFEHERYWRAIDVAALHHDLNFLPGRDLTEIGERGVNISGGQKQRVSLARAVYSNSDVYIFDDPLSALDAHVAQEVFSNCIKEGLRGKTRVLVTNQLHFLPQVDKIILVSEGMIKEEGTFEELSKCRHLFQKLMENAGKMEHQADSNEDRDSHDNDLPLNNEAIVELPNGASYEKKGKLQKSVLVKKEEWETGVVSWKVITRYKSALGGLWVVLILFGCYTLTEVLRISSSTWLSVWTSQDSAAADETEYFLFVYALFSFGQSIAREVKRLDSITRSPVYAHFGESLNGLSSIRAYKAYDRMAQINGKFMDNNIRFTLVNISSNRWLTIRLESLGGLMIWLIATFAVLQNGRAENKAMIASSMGLLLSYTLNITNLLSGALRQASRAENSLNAVERVDTYINLESEAPGIIEENRPPPGWPTTGSIEFENVVLTYRPELPPVLHGVSFTVCPTEKIGVVGRTGAGKSSTLNALFRIVELQRGRITIDGCDVSTIGLEDLRRVLTIIPQSPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNPLGLDAHVSEGGDNFSVGQRQLISLARALLRRSKVLVLDEATAAVDVRTDALIQKTIRQEFQSCTMLIIAHRLNTIIDCDRILLLDAGRVLEYGSPEELLKNEESAFNKMVQSTGPANAEYLCSLVFGRTKNNSGEYNKGQESHTRQLVFTHWAAATKFAIASTLSSLHNNLQKPSSKENKDFLDETKDAVTTLQEVLEGKHDEAIEETLTKYHVPTYRWWSTLHQVIEGLDILIRLPPDNIQQLEPDFEGRSFD* 979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1006 978 Coils Coil 57 77 - -
Lja5g1006 978 CDD ABCC_MRP_domain1 87 287 - -
Lja5g1006 978 SUPERFAMILY ABC transporter transmembrane region 8 71 IPR036640 GO:0005524|GO:0016021
Lja5g1006 978 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 82 310 IPR027417 -
Lja5g1006 978 Gene3D - 585 837 IPR027417 -
Lja5g1006 978 ProSitePatterns ABC transporters family signature. 738 752 IPR017871 GO:0005524
Lja5g1006 978 SUPERFAMILY ABC transporter transmembrane region 426 581 IPR036640 GO:0005524|GO:0016021
Lja5g1006 978 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 425 564 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja5g1006 978 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 87 311 IPR003439 GO:0005524
Lja5g1006 978 Pfam ABC transporter 105 240 IPR003439 GO:0005524
Lja5g1006 978 ProSitePatterns ABC transporters family signature. 213 227 IPR017871 GO:0005524
Lja5g1006 978 Gene3D ABC transporter type 1, transmembrane domain 425 582 IPR036640 GO:0005524|GO:0016021
Lja5g1006 978 Gene3D ABC transporter type 1, transmembrane domain 1 76 IPR036640 GO:0005524|GO:0016021
Lja5g1006 978 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 601 835 IPR003439 GO:0005524
Lja5g1006 978 Pfam ABC transporter transmembrane region 430 528 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja5g1006 978 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 591 833 IPR027417 -
Lja5g1006 978 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1 438 - -
Lja5g1006 978 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 437 856 - -
Lja5g1006 978 CDD ABCC_MRP_domain2 599 819 - -
Lja5g1006 978 PANTHER ABC TRANSPORTER C FAMILY MEMBER 11-RELATED 1 438 - -
Lja5g1006 978 PANTHER ABC TRANSPORTER C FAMILY MEMBER 11-RELATED 437 856 - -
Lja5g1006 978 SMART AAA_5 114 310 IPR003593 -
Lja5g1006 978 SMART AAA_5 627 820 IPR003593 -
Lja5g1006 978 Pfam ABC transporter 618 766 IPR003439 GO:0005524
Lja5g1006 978 Gene3D - 85 319 IPR027417 -
Lja5g1006 978 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 59 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1006 Lja-Chr5 10110974 10124194 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1006 599 835 Calmodulin-binding Proteins AT2G36910 32.780 1.20e-34 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1006 - - lja:Lj0g3v0211629.1 1169.07