Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1003 ATGGAAAGCTTCAAGGTACTACTTCTGGTATCCTTGTTGTTTTACTTCACGCCCCGGCTCAACGCGTTGGACACCATCTCTGCAGGACAATCTCTCAAAGGTAATGAGACTCTAATCTCACAAGCAGGAACTTTTGAAGCTGGATTCTTCAGCTTTGGAGATTCAAATAGCTTCTTGCACTTTGGTGTATGGTACAAGAATATTTCTCCTAGAACAGTTGTGTGGGTGGCCAATAGAGATACCCCGCTAGGAAACTCCTCATGTGTTTTGCAGTTGAAAAATGGAAGAAAACTTGCTATTCTTGACAGCAAAGGAGCAACCATCTGGGCCTCCAATTTATCAGCAACTGCAAGGAAGCCAGTTATGCAGCTTTTGCAGTCAGGAAACCTTGTTGTGAAAGAAGCAAATAGTTCTGCCGCCGGGAATTTTCTGTGGCAAAGCTTTGATTATCCTGGTGACACTCTACTTCCAGGGATGAGGCTCAGAAGTAGCAAGGTAAGTGGCCAGATTACATCTTTGACATCTTGGAGAAACACACAAGATCCTGCCATAGGGCCGTATTCATTCTTTATCGATACTCATGGCCTTCCTCAAGCAGTTATTACATATGGAGGGACTTTGTTGTTCAGAGCAGGATCATGGAATGGCTATTTTTTTGCGGGGATTCCGTCGAACACGCTGAATAAGTACTTTAATTTCACAGGGATTGTGTTAACTGGGACGAATGTTTCTTATAGATATGAAATTTTGAGTAGTTCCATTATTTCAAGGTTCATCCTCACTTCAACAGGGATTGTGCAGAGTTTTTTGTGGTCAGATCAGACAGAGAGTTGGCAGCTTCTACTAGCTGGCCCTGGTGACCAGTGTGACAATTACGCAATTTGCGGCGCAAATGCTAATTGTGATGTTAACAACAGTCCAATATGTGAGTGCCTGCATGGTTTCATTCTCATGTCACTAGAAAAATGGAACTCTTTAAATTGGTCTGGTGGGTGTGTTAGGAGAACAAAATTGGAGTGTGATAGCAGAGATGGGTTTCTGAAGGTTCCAAGTGTGAAGCTTCCCAACACGTCTCACTCGTGGTTTGACGTGAAGATGAACCTGAAACAGTGTGAGAACAAGTGTTTGAAAACCTGCTCTTGCACTGCATATGCATATTTGGATGTTAGAGATGGTGGAAGTGGTTGCTTGCTTTGGTTTAGTGACATTGTAGATATGAGAACTCTATCACCTGGAGCACAAGACCTTTATGTAAAAGTGGCAGCTTCAGAACTAGGCCATAAAGGGAACAAAAAGCTTCTGGCAGGAATTCTAGCAGGCTCCATTTCCCTAATCTTGGTTATAATTGTAATAGTAACTGGAGTGGTCATCCTGTGGTGGAGAATGAAACTTAAGAAGAAAGATAAGAACAAAACAAAAATATGGAGTCACACTGATGTGAAAGAAAATGAAGATATTGACATACCAATATTTGATTTTTCAACCATAGCCAAAGCTACTAACCACTTCTCTATTACTAACAAATTGGGAGAAGGTGGATTTGGTCCAGTTTATAAGGGAACACTTACAAATGGGCAAGAAATAGCTGTAAAGAGACTTAGCAACAATTCAGGTCAAGGATCAGAAGAGTTCCTAAACGAAGTTGCGCTCATAGCAAATCTTGTTGGTCAAAGACTCTACACTATAGCCTTGCCACCCATTCTATAA 1707 0.4165 MESFKVLLLVSLLFYFTPRLNALDTISAGQSLKGNETLISQAGTFEAGFFSFGDSNSFLHFGVWYKNISPRTVVWVANRDTPLGNSSCVLQLKNGRKLAILDSKGATIWASNLSATARKPVMQLLQSGNLVVKEANSSAAGNFLWQSFDYPGDTLLPGMRLRSSKVSGQITSLTSWRNTQDPAIGPYSFFIDTHGLPQAVITYGGTLLFRAGSWNGYFFAGIPSNTLNKYFNFTGIVLTGTNVSYRYEILSSSIISRFILTSTGIVQSFLWSDQTESWQLLLAGPGDQCDNYAICGANANCDVNNSPICECLHGFILMSLEKWNSLNWSGGCVRRTKLECDSRDGFLKVPSVKLPNTSHSWFDVKMNLKQCENKCLKTCSCTAYAYLDVRDGGSGCLLWFSDIVDMRTLSPGAQDLYVKVAASELGHKGNKKLLAGILAGSISLILVIIVIVTGVVILWWRMKLKKKDKNKTKIWSHTDVKENEDIDIPIFDFSTIAKATNHFSITNKLGEGGFGPVYKGTLTNGQEIAVKRLSNNSGQGSEEFLNEVALIANLVGQRLYTIALPPIL* 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1003 568 ProSiteProfiles PAN/Apple domain profile. 340 421 IPR003609 -
Lja5g1003 568 Gene3D - 20 148 IPR036426 -
Lja5g1003 568 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 13 558 - -
Lja5g1003 568 SMART blect_4 29 151 IPR001480 -
Lja5g1003 568 CDD PAN_AP_plant 336 421 - -
Lja5g1003 568 ProSiteProfiles Protein kinase domain profile. 503 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g1003 568 Gene3D Phosphorylase Kinase; domain 1 476 563 - -
Lja5g1003 568 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 13 558 - -
Lja5g1003 568 SMART ntp_6 341 420 IPR003609 -
Lja5g1003 568 CDD B_lectin 30 151 IPR001480 -
Lja5g1003 568 Pfam S-locus glycoprotein domain 209 316 IPR000858 GO:0048544
Lja5g1003 568 SUPERFAMILY Protein kinase-like (PK-like) 484 554 IPR011009 -
Lja5g1003 568 Pfam PAN-like domain 340 406 IPR003609 -
Lja5g1003 568 SUPERFAMILY alpha-D-mannose-specific plant lectins 60 215 IPR036426 -
Lja5g1003 568 CDD EGF_CA 287 317 - -
Lja5g1003 568 Gene3D Hepatocyte Growth Factor 337 418 - -
Lja5g1003 568 ProSiteProfiles Bulb-type lectin domain profile. 23 145 IPR001480 -
Lja5g1003 568 Pfam D-mannose binding lectin 72 177 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1003 Lja-Chr5 10072004 10075422 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1003 436 559 Receptor kinase-like Gene Family AT4G23190 44.800 3.82e-24 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lja5g1003 S_locus_glycop 3e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1003 - - lja:Lj3g3v3430300.2 704.901