Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0997 ATGTTGGAAATGGAGAAGGATTTTGATTCCAAGCTGAAGATTCAAGGGAATTCTTCGTCTTCCAATGGGGGTGGGGGTGGGACTGGGAATGTGCAGAGATCCAAGAGCTTTGCTTTTAGGGCTCCCCAGGAGAATTACACCATTCAGGACTTTGAATTGGGCAAGATCTATGGTGTTGGCTCGTATTCTAAGGTTGTTAGGGCAAAGAAGAAGGATACAGGAACTGTATATGCATTGAAAATCATGGACAAGAAATTTATTACCAAAGAGAACAAAACAGCTTATGTGAAGTTGGAACGTATAGTGCTTGATCAATTGGATCATCCTGGCATTGTGAGGCTATATTTTACATTTCAAGACTCATTTTCTCTGTACATGGCACTTGAATCCTGTGAAGGTGGAGAACTTTTTGATCAAATAACCAGGAAAGGTCGTCTAACTGAGGATGAGGCACGATTCTATGCAGCTGAAGTTGTGGATGCTCTCGAATACATACATAATTTGGGAGTGATACATCGTGATATTAAGCCAGAGAACTTATTACTTACGGCAGAAGGACATATTAAAATAGCTGATTTTGGGAGTGTGAAGCCAATGCAGGATAGCCAAATCACTGTCCTTCCAAATGCAGCTTCAGATGACAAAGCCTGCACATTTGTGGGAACAGCTGCTTATGTCCCTCCAGAGGTTCTTAATTCCTCTCCAGCAACTTTTGGAAATGACCTCTGGGCACTTGGTTGCACATTATACCAAATGCTATCTGGAACTTCCCCTTTTAAAGATGCAAGTGAATGGCTTATTTTCCAAAGAATTATAGCAAGAGAAATTCGATTTCCAGATTACTTTTCAGATGAAGCAAGAGACCTTATTGACCGTCTATTGGATTTGGAACCCAGCAGGAGACCAGGTGCAGGATCTGATGGTTATGCAACTTTGAAAAGGCATCCCTTTTTCAAGGGGGTTGACTGGGATAACTTAAGGGTACAGGTTCCCCCAAAACTTGCTCTGGAACCTGGGGTTAGTGGGACTCAGTCGCCTGCGGGTGATGATGCTCAGGACTCGTCATGGAGTCCTTCTCACATTGGGGATGGCTCTGCAGCTTCTGTTAGACAACCTGATGGAGCTACATCATCTACGGAAGGGACTGGTCACATAACCAGGCTAGCTTCAATTGATTCGTTCGATTCAAAATGGCAACAATTTTTGGATCCTGGCGAATCTGTTCTTATGATCTCTATGGTGAAGAAATTACAAAAACTAACAAGCAAGAAGGTGCAGCTCATCCTTACCAACAAACCGAAGTTGATCTACGTGGATCCGTCAAAATTACTTGTGAAAGGAAATATAATATGGTCTGATAATCCAAATGATTTAAGCATTCAAGTGACTAGTCCTTCACATTTCAAGATTTGCACACCTAAAAAGGTAATGTCGTTTGAGGACGCGAAGCAAAGAGCATCTCAGTGGAAGAAGGCAATTGAAGGACTTCAAAACCGGTGA 1500 0.424 MLEMEKDFDSKLKIQGNSSSSNGGGGGTGNVQRSKSFAFRAPQENYTIQDFELGKIYGVGSYSKVVRAKKKDTGTVYALKIMDKKFITKENKTAYVKLERIVLDQLDHPGIVRLYFTFQDSFSLYMALESCEGGELFDQITRKGRLTEDEARFYAAEVVDALEYIHNLGVIHRDIKPENLLLTAEGHIKIADFGSVKPMQDSQITVLPNAASDDKACTFVGTAAYVPPEVLNSSPATFGNDLWALGCTLYQMLSGTSPFKDASEWLIFQRIIAREIRFPDYFSDEARDLIDRLLDLEPSRRPGAGSDGYATLKRHPFFKGVDWDNLRVQVPPKLALEPGVSGTQSPAGDDAQDSSWSPSHIGDGSAASVRQPDGATSSTEGTGHITRLASIDSFDSKWQQFLDPGESVLMISMVKKLQKLTSKKVQLILTNKPKLIYVDPSKLLVKGNIIWSDNPNDLSIQVTSPSHFKICTPKKVMSFEDAKQRASQWKKAIEGLQNR* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0997 499 CDD STKc_PDK1 49 318 IPR039046 GO:0004674
Lja5g0997 499 MobiDBLite consensus disorder prediction 345 382 - -
Lja5g0997 499 Gene3D Phosphorylase Kinase; domain 1 49 134 - -
Lja5g0997 499 Coils Coil 479 499 - -
Lja5g0997 499 Pfam Protein kinase domain 53 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g0997 499 SMART serkin_6 51 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g0997 499 SUPERFAMILY Protein kinase-like (PK-like) 48 382 IPR011009 -
Lja5g0997 499 PANTHER SERINE/THREONINE-PROTEIN KINASE 25 495 - -
Lja5g0997 499 PANTHER 3-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE 1 25 495 - -
Lja5g0997 499 SUPERFAMILY PH domain-like 312 498 - -
Lja5g0997 499 Pfam PH domain 396 498 IPR033931 -
Lja5g0997 499 ProSiteProfiles Protein kinase domain profile. 51 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g0997 499 ProSitePatterns Serine/Threonine protein kinases active-site signature. 170 182 IPR008271 GO:0004672|GO:0006468
Lja5g0997 499 Gene3D - 375 499 IPR011993 -
Lja5g0997 499 Gene3D Transferase(Phosphotransferase) domain 1 135 332 - -
Lja5g0997 499 MobiDBLite consensus disorder prediction 336 382 - -
Lja5g0997 499 MobiDBLite consensus disorder prediction 13 29 - -
Lja5g0997 499 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0997 Lja-Chr5 9978779 9985859 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0997 1 499 AGC Kinase Gene Family AT3G10540 82.164 0.0 840
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_PDK1 Lja5g0997 Pkinase 3.4e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0997 K06276 - gmx:100788780 918.302
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0997 5 9978779 9985859 Lja5g0997 5 9978779 9985859 ECH