Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0977 ATGAGTGACCCATATGGTTTTCCAGAGGATCTCCGGAGACTAATATCAGCTAGAACCACCACCAACAACACACTTTCAGAGCCACCACCGTGTGCTTATGGTGGTGGACACGGTGGTGTAAACGCTCCTACTCCTTTTTTTCCTCCACCAAACAGCTACGACCCTATGATGGTAGGGGATCACGTTTTCTTACCTCGTGGCTTCACTCATCAGTATCTTCATCATCATGACTATTCCACCAGTACTGTTAACCCCACAAATAGCTCTACTACTGTTGCTGCTGCTGCTTCAGATCATGCTGCTGCTACTGCTACTGTTACTACTTCTGCATTATTCTGCAGCAGAATAGACACTGCTGCTACTGCTGCAGATAAAGGGTGGTTGGGGTTTGACTCCGGGAACAACAGGTGGCCTAGGCAGGAGACTCTTTCTCTTCTTGAGATCAGATCTCGTCTTGATTCCAAGTTCAGAGAGAATAACCACAAAGCACCCTTGTGGAATGAAATTTCTAGGATAATGGCTGAGGAATTTGGGTACCAAAGAAGTGGAAAGAAATGCAAAGAGAAGTTTGAGAATTTGTACAAGTATTACAAGAAGACCAAGGAAGGTAAAGCTAGTAGACAAGATGGGAAGCACTACAGATTCTTTAGGCAGCTTGAAGCAATATGTGGAGAACCAAATACTCATCATGCCTCAACTTCAGACAAAAACCCCCTTGGTTGTATTCAAACTCCAACTTTCACAATTAGCCAAGAGAACAACAACAACAATGGCCATGACTTCAACAACCTCAAGTCCTCAGAGAGTCTAAGTGTCTCAAACTCATCTGAATTTGACACCTCCTCATCTGAGAACAATGATGAGGATCTTTCAGCCATTGCACACATGATGAATAAGCAGAAAGGGTTACACCAGGGACAAAGTAGTCATAGAAGGAACAGAAAAAGTTGGAGAGCTAAAGTGGAGGAGATGGTGGATTCCCACATGAGGAAGATTATAGAGACTCAAGATGCTTGGATGGAGAAAATGTTGAATGTTGTTGAGCAACGAGAGCAAGAGATGGTGTCTAAAGAGGAAGAAAGGAAGAAAAAAGAGTCCTTGAGGTTTGATCAACAAGTGCATCAACTTTGGGCTAAGGAAAAAGCATGGGTTGAAGCTAGAGATGCTGCATTGGTTGAGGTTGTGAAGAAACATATTGGGATAGAACTTGAAGCATTGCAACCAAATAAGAACAAGAACCAAGCAAATGATTATCACTGTGAAGGTGTTGAACAAGGAAGTTGGTCAGAGATGGAGATTTCAAACTTGATTCAGCTGAGGACTAGTTTGGAACAGCGAGTGAGAGAAAGTGGGTATTTGGAGAATAATGTTGTTTGGGATGAAATAGCTGAGAAAATGGCTTGTTTGGGGTTTGAAAGGAGTGCAGGTGAGTGCAAGCAAGTGTGGGATGAGATCAGCATTTCTCTGAGAAGGACAGTGGAGGAGTGTGGTGGCAAAGCAAGGCCTTGGTGTTTGGGACTGAAGCTGACGGATGATTGA 1539 0.4353 MSDPYGFPEDLRRLISARTTTNNTLSEPPPCAYGGGHGGVNAPTPFFPPPNSYDPMMVGDHVFLPRGFTHQYLHHHDYSTSTVNPTNSSTTVAAAASDHAAATATVTTSALFCSRIDTAATAADKGWLGFDSGNNRWPRQETLSLLEIRSRLDSKFRENNHKAPLWNEISRIMAEEFGYQRSGKKCKEKFENLYKYYKKTKEGKASRQDGKHYRFFRQLEAICGEPNTHHASTSDKNPLGCIQTPTFTISQENNNNNGHDFNNLKSSESLSVSNSSEFDTSSSENNDEDLSAIAHMMNKQKGLHQGQSSHRRNRKSWRAKVEEMVDSHMRKIIETQDAWMEKMLNVVEQREQEMVSKEEERKKKESLRFDQQVHQLWAKEKAWVEARDAALVEVVKKHIGIELEALQPNKNKNQANDYHCEGVEQGSWSEMEISNLIQLRTSLEQRVRESGYLENNVVWDEIAEKMACLGFERSAGECKQVWDEISISLRRTVEECGGKARPWCLGLKLTDD* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0977 512 Coils Coil 340 367 - -
Lja5g0977 512 CDD GT1 428 492 - -
Lja5g0977 512 PANTHER TRIHELIX TRANSCRIPTION FACTOR PTL-LIKE 45 496 - -
Lja5g0977 512 PANTHER - 45 496 - -
Lja5g0977 512 ProSiteProfiles Myb-like domain profile. 135 194 IPR001005 -
Lja5g0977 512 Gene3D - 137 199 - -
Lja5g0977 512 Gene3D - 428 491 - -
Lja5g0977 512 CDD GT1 135 201 - -
Lja5g0977 512 Pfam Myb/SANT-like DNA-binding domain 135 222 IPR044822 -
Lja5g0977 512 Pfam Myb/SANT-like DNA-binding domain 427 503 IPR044822 -
Lja5g0977 512 ProSiteProfiles Myb-like domain profile. 420 486 IPR001005 -
Lja5g0977 512 SMART sant 424 488 IPR001005 -
Lja5g0977 512 SMART sant 133 196 IPR001005 -
Lja5g0977 512 MobiDBLite consensus disorder prediction 248 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0977 Lja-Chr5 9572015 9574827 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0977 136 501 Trihelix Transcription Factor Family AT5G03680 41.872 1.15e-85 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Lja5g0977 Myb_DNA-bind_4 3.3e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0977 - - gmx:100787750 628.632
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0977 5 9572015 9574827 Lja5g0977 5 9572015 9574827 ECH