Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0975 ATGATTTCTTCTGGAATCAACTTGGTGATGACTGTGATTGGGTTTGCGGTGAGCATCATGTTCATTGTTTTCGTTTGCACTAGACTCATCTGTGCTCGAATTCACATGAATGCTTCAAGGAGACCCTTTCCTATTGCTTCCAGATCCACCAATCTCAGCATGATGGAGCAGGGTTGCAATGGTCTTGAACCTGTAGCTATAGCAAAATTTCCAATAATGAAGTTCAGTGACAAGTTTTTTGCTGCAGCAGAAAATTCTCAATGCACAATCTGCCTATCAGAGTACCAAAGTGAAGACATGCTGCGTATCCTCCCCTCCTGTGGACACTCCTTCCATGTCACCTGCATAGACTTATGGCTGCAGCTGAATTTCACGTGCCCGGTTTGTCGTATATCATTGCGTGAATTTCCTGAGAGAAAGCCATTAATGCAACCCTTGTCCAGCTCTGCTTTGCAACCTCATTACGGCATGGAATCCTTTGACATTCATCATTATGACTGTATAATGGCTGATAATGGATTATTGTCAAGAACCCCTGACAGCCATGGGGCGAACCCTATACAAGAGGGTCATTTGCCATCTGAGGGTGATGGAGCAGTTGCTATGGACAATATCATCTGTTTAACTCAGGGCGATTTCATCAAAGATGAAGGGAAGAAGCATGTTGAGAGTCCATCAAATTTCTAG 687 0.4381 MISSGINLVMTVIGFAVSIMFIVFVCTRLICARIHMNASRRPFPIASRSTNLSMMEQGCNGLEPVAIAKFPIMKFSDKFFAAAENSQCTICLSEYQSEDMLRILPSCGHSFHVTCIDLWLQLNFTCPVCRISLREFPERKPLMQPLSSSALQPHYGMESFDIHHYDCIMADNGLLSRTPDSHGANPIQEGHLPSEGDGAVAMDNIICLTQGDFIKDEGKKHVESPSNF* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0975 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 137 IPR013083 -
Lja5g0975 228 PANTHER OS11G0150450 PROTEIN 1 227 - -
Lja5g0975 228 ProSiteProfiles Zinc finger RING-type profile. 88 130 IPR001841 -
Lja5g0975 228 PANTHER OS11G0150450 PROTEIN 1 227 - -
Lja5g0975 228 CDD RING-H2_EL5_like 87 130 - -
Lja5g0975 228 Pfam Ring finger domain 87 130 IPR001841 -
Lja5g0975 228 SUPERFAMILY RING/U-box 82 136 - -
Lja5g0975 228 SMART ring_2 88 129 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0975 Lja-Chr5 9554616 9557276 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0975 13 133 C3H Transcription Factor Family AT4G10150 34.677 2.42e-19 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0975 - - gmx:100794979 397.127