LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja5g0962	ATGGCTTCCTCTCTGCTTCCCTTTCTCTTGTGCTCACTGATTCTGTTACCCATCTGTGTTTTATCACAAACCAGAAGCAGCATAACCATTGGTGATTCTCTTAATGCTGGAAAAAGCACTTCCCCTTGGGTGGTTTCACCTTCTGGTGAATTTGCCTTTGGGTTTCTCCAACTTAAGAACAGTACTGATGACCTTTTCTTGCTTTCAACTTGGTATGCCAAGATTCCAGAGAAGACCATTGTCTGGTATGCTGACAAAGGCAACCCTGCTCCAAGGGGCTCAAAGGTGGTGCTCAGTGGTGAAGGATTAGTGCTCACTGCTCCCAGTGGTGAGCAGTTATGGAACACTTGGGAAATTAGTGCTGGAGTTTCTCTTGGTTTGTTGAATGACACTGGCAACTTTGTGCTTGAGGATGGATCCAGCTCATCAAGTCCTGGAACAAAACTGATCTTTGACAGATCAGGGGATTTGTATGTTTTGAGAGAGAACAATAAAAAGTATAAGGTGTCAGAGGGAGAGAGTACAGTATCTACTACTCAGTTTTATCTTCGAGCAACTCTTGATTTTGATGGGGTGCTCACACTCTATCTGTATCCGAAGAATTCAACTGGGGGTGGAGGTTGGACTCAAGTGTGGTCTAAACCAGATAATATCTGCAAATACATTGTTTCTGGAGGTAGTGGCATTTGTGGATATAACAGCTACTGCACCTTGAGTGAAGATAAGAGGCCAAAATGTCAGTGCCCAAAAAGATACTCACTGGTTGATCCTAATGATCCTTATGGAAGCTGCAAGCCTGATTTTATCCAGGGGTGTGCAGAAGATGAACTCAGTCACCAGAAAGACCTCTATGACTATGAGGTTTTGATAGATACTGATTGGCCTCTTTCCGATTCTGTGCTTCAAAAGCCTTTCACTGAAGAACAGTGCAGGAAGTCTTGTATGGAAGATTGTTTGTGTTCTGTTGCCATTTTCAGGGCAGGTGATAGCTGCTGGAAGAAGAAAATGCCACTTTCAAATGGGAGAGTTGATGCCACTCTAAATGGTGCTAAGGCCTTGTTGAAAGTAAGGAAAGACAATTCCTCTCTTGATGTTCCTCCAATTCCTTTTCCCATCATCGTAAACAAGAACAGGAACACTTTAGCTTTGGTTGGGTCTGTGCTTTTGGGTACCTCTGCTTTTCTCAATGTTGTATTGATTGGAGCAATATGCTTCAGCACTTTCTTTATTCTTCAGTACAAGAAGAAGCTTAGAAAAGGTACTACTGGTAGTGGTGTTCAACTTGAAACAAATTTGTGTTGCTTCACTTACCAGGAGCTGGAGGAAGCCACCAACGGGTTCAACAAAGAGCTAGGAAGGGGAGCTTTTGGTGTTGTTTATGAAGGAGTCCTGAACATGGGTTCCACAATAACTCGTGTCGCGGTGAAAAAGTTGAACAATTTCCTCTTGGAAGAGGTTCACAAGGAGTTCAAGAATGAGTTGAATGCCATTGGTCTTACTCACCACAAGAACCTGGTTCGTTTAATTGGATTCTGTGAGGCAGGATCTGAGCGTTTACTAATTTATGAGTACATGAGCAATGGCACTTTGGCAAGTTTTCTTTTCAATGGGGGAAAAAGAAAACCCAGTTGGAAACTGAGGCTACAAATTGCAATTGAGATTTCTAGAGGACTTGCGTATTTACATGAAGAGTGCGGCACAAAGATCATCCACTGTGACATAAAGCCTCAGAACATACTCCTTGATGATTCCTACAGTGCAAGAATATGCGACTTTGGATTGGCCAAGCTCTTGAAGATGAACCAGAGCAGAACCAACACTGCCATAAGGGGAACAAAAGGGTATGTTGCACTTGAATGGTTCAAAAACATGCCTATCACGGCTATGGTGGATGTCTTTAGTTATGGGGTGCTGCTACTAGAGATAGTTTCCTGCAGAAGAAGTGTAGAAGCGGAGCCAGAAGATGAAGCAAAAGCAATCCTAACAGATTGGGCTTATGACTGCTACAACGATGGTGCTTTATTTGCCTTGGTTGAGGGTGATCAGGAGGCATTGGAGGATGAGAAGAACTTGGAGAAGTTGGTGATGATTGCTATTTGGTGTGTTCAAGAGGATCCGGGTCTTAGACCCACCATGAGAACTGTGACGCTTATGCTTGAAGGTATTGTTGAAGTGTCAGTTCCACCATGTCCCTCACCAATTAGTATTCAGTATTCTCTAGATTAA	2226	0.4317	MASSLLPFLLCSLILLPICVLSQTRSSITIGDSLNAGKSTSPWVVSPSGEFAFGFLQLKNSTDDLFLLSTWYAKIPEKTIVWYADKGNPAPRGSKVVLSGEGLVLTAPSGEQLWNTWEISAGVSLGLLNDTGNFVLEDGSSSSSPGTKLIFDRSGDLYVLRENNKKYKVSEGESTVSTTQFYLRATLDFDGVLTLYLYPKNSTGGGGWTQVWSKPDNICKYIVSGGSGICGYNSYCTLSEDKRPKCQCPKRYSLVDPNDPYGSCKPDFIQGCAEDELSHQKDLYDYEVLIDTDWPLSDSVLQKPFTEEQCRKSCMEDCLCSVAIFRAGDSCWKKKMPLSNGRVDATLNGAKALLKVRKDNSSLDVPPIPFPIIVNKNRNTLALVGSVLLGTSAFLNVVLIGAICFSTFFILQYKKKLRKGTTGSGVQLETNLCCFTYQELEEATNGFNKELGRGAFGVVYEGVLNMGSTITRVAVKKLNNFLLEEVHKEFKNELNAIGLTHHKNLVRLIGFCEAGSERLLIYEYMSNGTLASFLFNGGKRKPSWKLRLQIAIEISRGLAYLHEECGTKIIHCDIKPQNILLDDSYSARICDFGLAKLLKMNQSRTNTAIRGTKGYVALEWFKNMPITAMVDVFSYGVLLLEIVSCRRSVEAEPEDEAKAILTDWAYDCYNDGALFALVEGDQEALEDEKNLEKLVMIAIWCVQEDPGLRPTMRTVTLMLEGIVEVSVPPCPSPISIQYSLD*	742

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja5g0962	741	Pfam	Protein tyrosine and serine/threonine kinase	447	716	IPR001245	GO:0004672\|GO:0006468
	Lja5g0962	741	CDD	STKc_IRAK	451	722	-	-
	Lja5g0962	741	PANTHER	G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5	21	141	-	-
	Lja5g0962	741	PANTHER	G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5	143	736	-	-
	Lja5g0962	741	SMART	serkin_6	445	719	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lja5g0962	741	ProSitePatterns	Protein kinases ATP-binding region signature.	451	477	IPR017441	GO:0005524
	Lja5g0962	741	ProSiteProfiles	Bulb-type lectin domain profile.	25	149	IPR001480	-
	Lja5g0962	741	ProSiteProfiles	Protein kinase domain profile.	445	723	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lja5g0962	741	SUPERFAMILY	alpha-D-mannose-specific plant lectins	66	147	IPR036426	-
	Lja5g0962	741	SMART	blect_4	25	145	IPR001480	-
	Lja5g0962	741	PANTHER	G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RLK1	21	141	-	-
	Lja5g0962	741	PANTHER	G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RLK1	143	736	-	-
	Lja5g0962	741	SUPERFAMILY	Protein kinase-like (PK-like)	436	733	IPR011009	-
	Lja5g0962	741	PIRSF	SRK	139	740	IPR024171	GO:0004674
	Lja5g0962	741	PIRSF	SRK	1	145	IPR024171	GO:0004674
	Lja5g0962	741	Gene3D	Phosphorylase Kinase; domain 1	409	524	-	-
	Lja5g0962	741	Gene3D	-	19	144	IPR036426	-
	Lja5g0962	741	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	569	581	IPR008271	GO:0004672\|GO:0006468
	Lja5g0962	741	Gene3D	Transferase(Phosphotransferase) domain 1	525	730	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja5g0962	Lja-Chr5	9396327	9398777	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja5g0962	431	721	Receptor kinase-like Gene Family	AT1G60800	41.356	1.06e-69	237

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_SD-2b	Lja5g0962		PK_Tyr_Ser-Thr	7.6e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja5g0962	-		-	gmx:100815462	988.408