Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0961 ATGGAAGTGATGTCTGTGTCTGTAATGTTCACCAAATGTCAAAAAATTTCCTCTGTAAACCCAAACAGAAGCCAAGTTCACCAACTTCCAACAAACATAACATTACCCAACAAATCTTATCATTCCAATCTTCCTTCTTCATCTTCTTCTTCAATTTCATGTAACAGGTTCTTTACTATCATAGCAGCAGCAGCAGCAACAACATACCCTTCCTTCACTCCCTCTACCACACACAACCGCCATTGGATGGTGCTCATGGACAAGCCACCTCTTGGGGTCATTTCCAAGTCACAAGTCATTGATTATTATGTGAAGACTCTGCAAACAGTTATGGGCAGGAGTGAGAAAGAAGCTCAAATGTGTCTCTATGATGCTTCCTGGGATACACACTTTGGTTTTTGTTGTGACATTGATGAAGAAATATCCTCCCAGCTTGCTAGTTTGCCCGGGGTCTTGTCGGTTAGGCCTGACCCGGATTTCAACTCTTTGAAAAAGGACTATAGTTTATCAAGTGGCCAGGCAGGTCTGTCATCAGGATTACAAACTAGAACCAATATGTTGTTTCCTGCTGGAAATTCAAAGCATTGGCTTGTTAGAATGGATAAACCTGGGGTTGAGGTTGTTACCAAGGCTCAGATTGTCGATTACTATGCTCAAATTTTGACTAAGGTCATGGGAAATGAGAAGGATGCACAGATGTGTATATATCATGTTTCCTGGAAAACCAACTTTGGCTTTTGTTGCGAACTTGATGAGGATTGCGCTCAGGATCTAGCTGGTGTTCCTGGGGTCTCATCAGTTCAGCCAGATGACAATTTTGAGTCTGAAAATAAGAATTATGAAGGTAGTAACCTGGAAGATAGTTTGAGTGTGCCAAACTCTTCAGAAGCAAGTCAGGAAGCTTCCTTGAGAACAAAGAAACTTTTTGTGACAGGGCTATCATTTTATACATCTGAGAAAACCTTACGTGCAGCATTTGAAGGCTTTGGTGAGCTTGTTCAAGTTAAGGTTATTATCGATAAAATTTCAAAAAGGTCCAAAGGTTATGCATTTATTGAATACACCACGGAGGAGGCTGCAGGTGCTGCACTCAAAGAGATGAATGGCAAGATTATCAATGGCTGGATGATAGTGGTAGATGTTGCCAAGACTAACCCACCAAGATTCAACAGGGGTCATGCCAGACCACCAGCTTAA 1197 0.4169 MEVMSVSVMFTKCQKISSVNPNRSQVHQLPTNITLPNKSYHSNLPSSSSSSISCNRFFTIIAAAAATTYPSFTPSTTHNRHWMVLMDKPPLGVISKSQVIDYYVKTLQTVMGRSEKEAQMCLYDASWDTHFGFCCDIDEEISSQLASLPGVLSVRPDPDFNSLKKDYSLSSGQAGLSSGLQTRTNMLFPAGNSKHWLVRMDKPGVEVVTKAQIVDYYAQILTKVMGNEKDAQMCIYHVSWKTNFGFCCELDEDCAQDLAGVPGVSSVQPDDNFESENKNYEGSNLEDSLSVPNSSEASQEASLRTKKLFVTGLSFYTSEKTLRAAFEGFGELVQVKVIIDKISKRSKGYAFIEYTTEEAAGAALKEMNGKIINGWMIVVDVAKTNPPRFNRGHARPPA* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0961 398 MobiDBLite consensus disorder prediction 282 296 - -
Lja5g0961 398 SUPERFAMILY RNA-binding domain, RBD 295 394 IPR035979 GO:0003676
Lja5g0961 398 MobiDBLite consensus disorder prediction 265 296 - -
Lja5g0961 398 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 308 374 IPR000504 GO:0003723
Lja5g0961 398 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 306 384 IPR000504 GO:0003723
Lja5g0961 398 Gene3D - 275 397 IPR012677 -
Lja5g0961 398 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 24 396 IPR039206 GO:0016554
Lja5g0961 398 SMART rrm1_1 307 380 IPR000504 GO:0003723
Lja5g0961 398 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 187 274 IPR037045 -
Lja5g0961 398 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 64 161 IPR037045 -
Lja5g0961 398 PANTHER ORGANELLE RRM DOMAIN-CONTAINING PROTEIN 1, CHLOROPLASTIC 24 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0961 Lja-Chr5 9392445 9394972 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0961 298 388 C2H2 Transcription Factor Family AT2G19380 30.769 8.21e-11 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0961 - - gmx:100791652 609.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0961 5 9392445 9394972 Lja5g0961 5 9392445 9394972 ECH