Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0932 ATGGCGGCGGCTTCCTCATCATCTTCACCATTCTTTGGAATCAGAGAAGAAAATTCAAGTCAGATTACACATCTTCATCAATCCCCCACAGCTGCTTCCTCAGCCGCTCTCACCACCATGCCTCAGAAGAAACGGAGGAATCAACCCGGAACACCAAGTCCAGATGCAGAAGTGATAGCATTGTCTCCCAAGACCCTAATGGCAACAAACAGGTTCATATGTGAGGTGTGCAATAAGGGGTTCCAAAGGGAGCAAAACCTACAGCTTCACAGAAGAGGACACAACCTGCCTTGGAAGCTAAAGCAGAAATCTAACAAAGAGCCAAGGAGAAAGGTTTATTTGTGTCCTGAGCCCACATGTGTCCATCATGACCCTTCAAGAGCTTTAGGGGACCTCACTGGGATCAAGAAGCACTACTCTCGCAAGCATGGTGAGAAGAAGTGGAAGTGTGAAAAGTGCTCTAAGAAGTATGCTGTTCAGTCAGATTGGAAAGCACATTCTAAGACTTGTGGCACTAGAGAATATAGATGTGATTGTGGCACCCTCTTCTCAAGGCGTGATAGTTTCATCACTCATAGGGCCTTCTGTGATGCCCTAGCACAAGAAAGTGCAAGACTCCCAAATGGCTTAACTCCTTTGGGGACTAATTTGTATGGCACCCCCACAAATCACATGACCTTAGGCCTCTCACAAATTGGCACCCAAATTTCTCAGCAGCTTCAAAATCACAACCAAAATGCCACTAACAACAACACCTTGCGCCTTACCGGTGCCGCAAAGTTCGAGCATTTAATCCCATCTCTAAACCAATCCTCATCATTTGGAGTACAACACTCACCACAGCAATCAATCCCTTCCTCAGCTTTCTTCATGACTGAACCAAATCAAACATTTGATCAAGAACCACACCAAGGACCATTTTCAAACAAGAACCTAAATGGTTTGATGCAACTTCCTGATCTTCAAGGCAACAACAACACCAACTCAAATTCTCCTTCTAATCTCTTCAACCTCAGCTTCTTTCCAAATAGCACCATGATGGATCAATTCAACAATCACCAAGGAACAACATCACTCTATATGAACAACAACAACAACAACCCTATCATCAGTGATCATCATCAAGTTGGTAACTCTGGCTTGTCTTCTTCACTCTTTGGAAACTCATTGCAACATGAAAACATGTCATCTCCTCACATGTCAGCCACTGCATTGCTTCAGAAAGCTGCTCAAATGGGTTCAACCGCCACAACCACCAAGGGTGCAGGTGGTTCTTCTATACTAATTAGAGGAATGAGTACTAGCTCATCAACCTATAATAATAATGATTCCAGATCTGACACTGAAAGGGACCTTGTATCTGATAACAACATTGCCACTTTTGGAAGTGACCAAAGAAGAGGGGAGGGTGTGAATGTGATAATGAGAACAAACATGGAAAATGACCGCCGCAATCTTCACGGATTGATGATCAACTCTATTACCAACGGGAACAACACATCCATATTTGGTAACATGCAAGGGAATGAAAAGTTGCCACAAAATCTTGATTTGAGTTTTGGAGGTTCTGACAAGTTGACGTTGGATTTTCTGGGTGTTGGAGGAATGATGAGAAACATCAATAGTGGTGGTGAACATCAACAACAACGTGTGATGGATCCTCATGACCTAAAATCAGCACAGTCAACTCAGCTACATTTTGGAAGCTCAACTATGCAATGA 1722 0.4344 MAAASSSSSPFFGIREENSSQITHLHQSPTAASSAALTTMPQKKRRNQPGTPSPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSNKEPRRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARLPNGLTPLGTNLYGTPTNHMTLGLSQIGTQISQQLQNHNQNATNNNTLRLTGAAKFEHLIPSLNQSSSFGVQHSPQQSIPSSAFFMTEPNQTFDQEPHQGPFSNKNLNGLMQLPDLQGNNNTNSNSPSNLFNLSFFPNSTMMDQFNNHQGTTSLYMNNNNNNPIISDHHQVGNSGLSSSLFGNSLQHENMSSPHMSATALLQKAAQMGSTATTTKGAGGSSILIRGMSTSSSTYNNNDSRSDTERDLVSDNNIATFGSDQRRGEGVNVIMRTNMENDRRNLHGLMINSITNGNNTSIFGNMQGNEKLPQNLDLSFGGSDKLTLDFLGVGGMMRNINSGGEHQQQRVMDPHDLKSAQSTQLHFGSSTMQ* 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0932 573 MobiDBLite consensus disorder prediction 1 57 - -
Lja5g0932 573 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 548 - -
Lja5g0932 573 MobiDBLite consensus disorder prediction 416 443 - -
Lja5g0932 573 MobiDBLite consensus disorder prediction 539 573 - -
Lja5g0932 573 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 548 - -
Lja5g0932 573 ProSitePatterns Zinc finger C2H2 type domain signature. 74 94 IPR013087 -
Lja5g0932 573 MobiDBLite consensus disorder prediction 416 451 - -
Lja5g0932 573 Pfam Zinc-finger double-stranded RNA-binding 72 94 IPR022755 -
Lja5g0932 573 Gene3D Classic Zinc Finger 126 204 - -
Lja5g0932 573 Gene3D Classic Zinc Finger 53 119 - -
Lja5g0932 573 SUPERFAMILY beta-beta-alpha zinc fingers 71 168 IPR036236 -
Lja5g0932 573 SMART c2h2final6 148 168 IPR013087 -
Lja5g0932 573 SMART c2h2final6 72 94 IPR013087 -
Lja5g0932 573 SMART c2h2final6 113 143 IPR013087 -
Lja5g0932 573 ProSiteProfiles Zinc finger C2H2 type domain profile. 72 94 IPR013087 -
Lja5g0932 573 MobiDBLite consensus disorder prediction 1 49 - -
Lja5g0932 573 MobiDBLite consensus disorder prediction 541 573 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0932 Lja-Chr5 9016969 9021842 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0932 11 412 IDZ Gene Family AT2G02070 49.028 5.45e-124 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja5g0932 zf-C2H2_jaz 3.5e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0932 K25870 - gmx:100780268 583.563