Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0904 ATGGAGGCAGCAGTTGATGTACTAGCACCTAAACGTCCCGCTCCAAGTGGAATTTCTCCTCAGGGACATAAAAGACTGAAACTGTCCAGTGATAGTCTGCCATACTCAGCACATGATAAAGCTGTACCGGAGGCACCTACAAATGTTGAAGACTTCAGCAATCCATTTGCAATCTCTGATTTTTTAAATCGTTTAGAAAGTGGAAAGTTTGGAAGTGTCACAAAGGACATAGAGGCCCTTATAACCCGAAAAATGCAAGTACTGGGCCCTTTCTTTGCAAAATTTCCTAAACTTGTTACTCAATCATTAAAAGTGGTTGTGAACCACGGTGAAGAAAGTAATAAGTTGGAAAATAAAAAAGGTACCATCATGTCACATGATAAAGTAATAGATTTGGAAGAGGAGCGCACTAAAAAGGATGCTTCTGCAGTACAGCCTGTTGTGATTATTGATTCGGATGAGGAAGATGATAGAGATAAAAATTCTTCTTCTCTTCCATTTAATGAAGTAATGTTTCCGAACTCCCTCCAATCTCCTGCATTGAGGATGATGGGGTATCGTGCTCCCATTGCTTACCATGGAGAAAGTGAAGATCCTAAATTTGAGCCAACTCGGGCTGCTAAAGATAAAACTCAGAGAGATAAAGGTGTTTATGTTGGTGTACAGGAGGAAGATGAGGTTGATACTGAAGATGATGGGCTTGATGATATTTGGAGGGAAATGTCAATGGCCGTAGAATGTTCGAAGGATGCTTCTGTGAATCCTCCACCTGAGGAAGAAGTTGAAAAAGAAGACGACTGTGATCATTCTTTTGTTTTAAAAGATGATCTTGGTTATGTTTGTCGTGTTTGTGGGGTCATTGACCGAGGAATTGAAACCATATTTGAGTTCCAGTACAAGGTTAAAAGGAGCACAAGAACTTACATGGCTGATTCATGGAATGCCAAAACAAAAGTTGATGTATATGGAATTAATATTGCTGAAGATGACATCATGTTTACTGAAATTTCAGCACATCCTAGGCATATGAAACAAATGAAGTCTCATCAAATTGAAGGGTTCAATTTTCTCGTTAGAAACCTTGTAGGTGACAATCCTGGGGGCTGCATCTTGGCCCATGCTCCAGGATCTGGGAAGACATTCATGATAATCAGTTTCATGCAAAGTTTTCTAGGAAAGTACCCAAATGCTAGACCTCTGGTGGTGCTTCCCAAGGGAATACTATCTACTTGGAAAAAGGAGTTTCAGACATGGCAAGTGGAGGACATACCACTTTATGATTTTTATACTGTGAAGGCAGACAGTAGATCACAGCAGTTGGAAGTTTTGAAACAATGGGTGGAATGCAAGAGCATCCTTTTCTTGGGGTACAAGCAGTTCTCTTCAATTGTCTGTGATGATAGTACTAACAGCATATCAATATCTTGCCAAGATATATTGCTTAAGGTACCTTCAATTCTCATTTTAGATGAAGGACATAATCCGCGGAATGAGAATACCGATATGGTGCAGTCCCTTGCAAAGGTAAAAACACCTAGAAAAGTTGTATTGTCAGGTACCTTGTATCAAAACCATGTGAAGGAGGTATTTAATATTTTGAATCTGGTTCGGCCAAAGTTTCTAAAGATGGAAACATCTAGGCCTATTGTCAAGCGCATTCACAGTAGAGTACATATATCAGGCAAGAAATCTTTCTATGATTTGGTGGAGGACACTTTGCAGAAGGACCCAGATTTTAAAAGGAAAATAGCTGTTATTCAAGATTTGCGTGAGATGACGAGTAAGGTACTTCACTATTACAAAGGAGATTTTCTTGATGAGCTTCCTGGTCTGGTTGATTTTACAGTGTTGCTTAAGCTGACCCCAAGACAGAAGCATGAAACTGGGAAATTAAAGAATATATCTAGAAAGTTCAAGGTATCTTCTATGGGCAGTGCGCTGTATCTTCACCCTAGATTGATACCTGTTGCGGATAAATGTGCAGAAAACTCTGTATCTGACCAAGTGGTGGATGATTTAATAGAGAAGTTGGATGTGAAAGATGGAGTGAAGTCAAAATTCTTCATGAACATTCTAAACTTTTGTGAATCTTCCAACGAGAAGCTTCTGGTGTTCAGCCAATATCTCCTACCTTTGAAATATTTAGAGAGGTTAGTTATGAAATGGAAAGGTTGGAGTTTTGGGAAAGAAATGTTCGGAATCTCAGGGGAATCTAGCTCTGAGCAAAGGGAGTGGTCCATGAACAAATTCAACAATTCACCTGATGCTAAAATCTTCTTTGGCTCAATCAAGGCTTGTGGAGAGGGCATATCATTGGTTGGGGCATCCCGAGTACTCATTTTGGATGTTCATCTGAATCCATCAGTTACTCGTCAAGCTATTGGCCGTGCATTCCGACCAGGACAGACAAAGAAGGTCTTTGTGTATCGATTGATAGCTGCTGACTCTCCAGAAGAGGACGATCACATTACTTGTTTCAAGAAGGAATTGATTTCAAAGATGTGGTTTGAATGGAATGAGTACTGTGGTGATAGAGCCTTCCAAGTTGAGACTGTTAGTGTCAATGAATGTGGTGATGAGTTCCTTGAGACTCCAATGTTAGGAGAAGATGTAAAAGCTTTGTATAAAAGGTAG 2634 0.399 MEAAVDVLAPKRPAPSGISPQGHKRLKLSSDSLPYSAHDKAVPEAPTNVEDFSNPFAISDFLNRLESGKFGSVTKDIEALITRKMQVLGPFFAKFPKLVTQSLKVVVNHGEESNKLENKKGTIMSHDKVIDLEEERTKKDASAVQPVVIIDSDEEDDRDKNSSSLPFNEVMFPNSLQSPALRMMGYRAPIAYHGESEDPKFEPTRAAKDKTQRDKGVYVGVQEEDEVDTEDDGLDDIWREMSMAVECSKDASVNPPPEEEVEKEDDCDHSFVLKDDLGYVCRVCGVIDRGIETIFEFQYKVKRSTRTYMADSWNAKTKVDVYGINIAEDDIMFTEISAHPRHMKQMKSHQIEGFNFLVRNLVGDNPGGCILAHAPGSGKTFMIISFMQSFLGKYPNARPLVVLPKGILSTWKKEFQTWQVEDIPLYDFYTVKADSRSQQLEVLKQWVECKSILFLGYKQFSSIVCDDSTNSISISCQDILLKVPSILILDEGHNPRNENTDMVQSLAKVKTPRKVVLSGTLYQNHVKEVFNILNLVRPKFLKMETSRPIVKRIHSRVHISGKKSFYDLVEDTLQKDPDFKRKIAVIQDLREMTSKVLHYYKGDFLDELPGLVDFTVLLKLTPRQKHETGKLKNISRKFKVSSMGSALYLHPRLIPVADKCAENSVSDQVVDDLIEKLDVKDGVKSKFFMNILNFCESSNEKLLVFSQYLLPLKYLERLVMKWKGWSFGKEMFGISGESSSEQREWSMNKFNNSPDAKIFFGSIKACGEGISLVGASRVLILDVHLNPSVTRQAIGRAFRPGQTKKVFVYRLIAADSPEEDDHITCFKKELISKMWFEWNEYCGDRAFQVETVSVNECGDEFLETPMLGEDVKALYKR* 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0904 877 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 669 853 IPR001650 -
Lja5g0904 877 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 18 877 IPR044567 GO:0080188
Lja5g0904 877 MobiDBLite consensus disorder prediction 1 25 - -
Lja5g0904 877 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 360 539 IPR014001 -
Lja5g0904 877 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 327 541 IPR027417 -
Lja5g0904 877 Pfam SNF2-related domain 366 580 IPR000330 GO:0005524|GO:0140658
Lja5g0904 877 Gene3D - 609 859 IPR027417 -
Lja5g0904 877 Gene3D - 315 569 IPR038718 -
Lja5g0904 877 SMART ultradead3 342 556 IPR014001 -
Lja5g0904 877 SMART helicmild6 716 801 IPR001650 -
Lja5g0904 877 MobiDBLite consensus disorder prediction 194 214 - -
Lja5g0904 877 PANTHER PROTEIN CHROMATIN REMODELING 35 18 877 - -
Lja5g0904 877 Pfam Helicase conserved C-terminal domain 690 800 IPR001650 -
Lja5g0904 877 CDD SF2_C_SNF 675 812 - -
Lja5g0904 877 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 485 839 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0904 Lja-Chr5 8741051 8746725 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0904 698 819 RAD5 or RAD16-like Gene Family AT5G43530 37.705 3.30e-14 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lja5g0904 SNF2_N 5.6e-20 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0904 K10875 - gmx:100780454 1361.67