Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0903 ATGTGTAGGTGGATGAAGACCAACTCAAACATGCTTCTATGGTTTCCCATTGTGGTTCTCACCTTGTTCCTTGCAACGGTGCAGTGCCAGCCAACGAATGACTATGATGAAATCGACAACCCTGCTGTTCTTCCTCTCATTACTCAGCTTGTGTATAGCCGACTTTCCAATTTGACTTCACTTCTCAGTCAAGAAATTGGCACACAGTCAACTTTCTGTGTCAAAGATCCGGATTCAGATTGGAATCAAGCATTTAATTTTTCTTCTGATTTGGGCTTCCTAACTTCTTGCATTAAGAAGACTCAAGGAGATATTACGAAACGCTTGTGTACAGCAGCAGAAGTGAAGTTTTACTTAAATGGTTTATTGGAGAGTTCTACAAGTGCCAATTATTTAAAGCCTAACAAGAACTGCAATTTAACCTCATGGGTCTCTGGCTGCGAGCCAGGATGGGCCTGTAGTGTTCCCTCGAGCGAGAAGACTGACCTTAGAAATTCGAAGGAGATACCTGCAAGAACTTCAAACTGTCAAGCATGTTGTGAAGGTTTCTTTTGTCCTCACGGCATCACATGCATGATACCATGTCCTCTAGGTTCTTATTGCCCTCTTGCTACACTCAATAAAACAACTGGCATATGTGAACCATATCTTTATCAACTGCCCACAATGAAGCCAAACCATACTTGTGGGGGAGCAAATGTGTGGGCTGACGTCAGTCGCAGTAATGAAATATTTTGCTCAGCAGGATCGCATTGTCCAACAACTACCAAAAGAATTCCTTGCAGTAGTGGGCATTACTGCAGGATGGGATCCACATCTGAGAAAAGTTGCTTCAAGTTGAGTTCATGTAATTCAAGCACTGCAACCCAAAATATGCAAGCATATGGAATTATGCTCATTGCTGCTTTGAGTACTTTGCTACTCATTATTTACAACTGTTCTGACCAAGTTCTCACTACTAGGGAAAGGAGAATGGCCAAATCTAGGGAAGCTGCAGCTAGAAATGCAAGGAAGACTGCCAATGCACGGCAAAAATGGAAATTTGCAAAAGATGCTGCTAAGAAGGGTGCAAGTGGGCTGCAAGCTCAACTATCACGCACATTCTCTCGTAAGAAGGATACTTCAGATCCAGAAAAATTTCGAATTTTGAATCAATCAGCTTCTGGAACAGATGTTGAATTATTGCCACACTCACAACCTATCACTTCAAGCACGGTTGCAAGTCCATCTGTGGTGACGAAGGAAGAGGGCGAAAAAACAAGTGATCTAATGCACATAATACATGAAATTGAAAATGACCCAGATATTCATGACAACCTTACTACAGAAACAGGAACTAGAGTTAACATTGTTGCAGGAAGTGTGTCAAAGGAAAAACAACCACATAGTCATAGCCAAATGTTTAAGTATGCTTATGCTCAACTTGAAAAAGAGAAGGCTCAGCAAGAAGAAAATAAGAACCTTACCTTCTCAGGAGTACTCAAAATGGCAACAAGCACTGAGAAAAGGAAAAGACCTTTTATTGAGATTTATTTTGAAGATCTGACTCTCACATTGAAAGCTCAAAACAAACATATATTGAGAAATGTTACTGGAAAAATCAAACCTGGCCGCATTACTGCTGTCATGGGTCCATCAGGGGCTGGCAAGACAACATTGCTTTCAGCTCTAGCTGGAAAGGCATTTGGATGCCTGGTTACTGGTTCAATTCTTATAAATGGAAGGAATGAATCAATTCAATCCTATAAGAAAATTATTGGCTTTGTGCCACAAGATGATGTAGTTCATGGAAATCTGACAGTGGAAGAGAATCTCTGGTTCAGTGCACAGTGCAGGCTGCCAGCTAACATGTCAAAACCAGAAAAAGTTCTGGTTGTTGAAAGAGTTATTGAATTCTTGGGACTGCAATCTGTGCGGAATTCTGTGGTTGGAACTGTGGAAAAGAGAGGGGTCTCTGGAGGCCAAAGGAAGCGTGTAAATGTTGGATTGGAGATGGTTATGGAACCTTCTCTTTTGATCTTGGATGAACCCACATCTGGCTTGGACAGTGCATCATCTCAGCTACTGCTAAGGGCACTAAGACGGGAAGCTCTTGAGGGAGTGAACATATGCATGGTGGTTCACCAACCTAGCTATGCTTTGTTCCAGATGTTTGATGACTTAATACTTCTGGCTAAAGGTGGCCTTACAGTCTATCATGGACCTGCCAAGAGAGTTGAAGAATACTTTTCAGGCCTGGGAATCAATGTTCCAGACCGAATTAATCCTCCAGATTACTTCATTGACATTTTGGAGGGCATAGCAGTACCTGGTGGAAGCCCAGGGCTCAGTTATCGAGAGCTGCCTGTTAGATGGATGCTTCATAATGGATATCCGGTACCTCTTGATATGAGGCAGAATGCAGCACAAGTTGATATGTCCCATAGTGTAAATTCAGATTATGAAATAGATCCCAATGCATCTGGTCGTGCGAAAAAAACCTTCACTGGAGAATTATGGCAAGATGTGAGAAACAATGTGGAACTGCAGGGGGAGAAGATAAGACTCAATTTTTTGAAATCCAAGGATTTATCTAACCGGGAAACTCCAGGTTTATTCAAGCAATATAAGTACTTTCTTATACGGGTTGGCAAGCAGCGATTGGGGGAAGCTAGGATCCAAGCCATAGATTATATTATTTTGTTACTTGCTGGAGCCTGCTTAGGATCACTTACCAAAGCGAGTGATCAAACGTTTGGTGCAGTCGGGTTCACCTATACGGTGATTGCTGTGTCTCTTCTGTGCAAAATAGCGGCTTTGAGATCATTTTCTCTGGATAAATTGCACTACTGGAGGGAAAGTGATTCTGGCATGAGCAGCTTGGCTTATTTCCTATCCAAAGACACAATTGATCATTTTAATACTGTGATCAAGCCTATGGTGTACCTCTCTATGTTCTATTTCTTCACCAATCCACGATCTACTTTTGCAGATAATTATGTTGTGTTGCTTTGTCTTGTGTACTGTGTGACTGGCATAGCATATGCATTGTCCATATTTTTTGAACCAGGCGCCGCCCAGCTGTGGTCAGTACTCCTTCCAGTTGTTTTGACCCTCATTGCAACACAAACGAAAGATAGTAAATTTTTGAAGGATATAGCTAACTTGTGCTACTCGAAGTGGGCTTTACAAGCATTCGTCATTGCAAATGCTGAAAGGTATCAAGGAGTGTGGCTTATAAGTCGTTGTGGTTCACTTCTAAAAAATGGCTATAATCTTCATAATTGGAGTCAGTGCATATCCATCCTCATTCTCATGGGTGTAATTGGCCGGGTAATAGCATTTTTTTGTATGGTCACCTTCCAAAAGAAGTAG 3354 0.4174 MCRWMKTNSNMLLWFPIVVLTLFLATVQCQPTNDYDEIDNPAVLPLITQLVYSRLSNLTSLLSQEIGTQSTFCVKDPDSDWNQAFNFSSDLGFLTSCIKKTQGDITKRLCTAAEVKFYLNGLLESSTSANYLKPNKNCNLTSWVSGCEPGWACSVPSSEKTDLRNSKEIPARTSNCQACCEGFFCPHGITCMIPCPLGSYCPLATLNKTTGICEPYLYQLPTMKPNHTCGGANVWADVSRSNEIFCSAGSHCPTTTKRIPCSSGHYCRMGSTSEKSCFKLSSCNSSTATQNMQAYGIMLIAALSTLLLIIYNCSDQVLTTRERRMAKSREAAARNARKTANARQKWKFAKDAAKKGASGLQAQLSRTFSRKKDTSDPEKFRILNQSASGTDVELLPHSQPITSSTVASPSVVTKEEGEKTSDLMHIIHEIENDPDIHDNLTTETGTRVNIVAGSVSKEKQPHSHSQMFKYAYAQLEKEKAQQEENKNLTFSGVLKMATSTEKRKRPFIEIYFEDLTLTLKAQNKHILRNVTGKIKPGRITAVMGPSGAGKTTLLSALAGKAFGCLVTGSILINGRNESIQSYKKIIGFVPQDDVVHGNLTVEENLWFSAQCRLPANMSKPEKVLVVERVIEFLGLQSVRNSVVGTVEKRGVSGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSASSQLLLRALRREALEGVNICMVVHQPSYALFQMFDDLILLAKGGLTVYHGPAKRVEEYFSGLGINVPDRINPPDYFIDILEGIAVPGGSPGLSYRELPVRWMLHNGYPVPLDMRQNAAQVDMSHSVNSDYEIDPNASGRAKKTFTGELWQDVRNNVELQGEKIRLNFLKSKDLSNRETPGLFKQYKYFLIRVGKQRLGEARIQAIDYIILLLAGACLGSLTKASDQTFGAVGFTYTVIAVSLLCKIAALRSFSLDKLHYWRESDSGMSSLAYFLSKDTIDHFNTVIKPMVYLSMFYFFTNPRSTFADNYVVLLCLVYCVTGIAYALSIFFEPGAAQLWSVLLPVVLTLIATQTKDSKFLKDIANLCYSKWALQAFVIANAERYQGVWLISRCGSLLKNGYNLHNWSQCISILILMGVIGRVIAFFCMVTFQKK* 1118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0903 1117 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 36 1114 - -
Lja5g0903 1117 PANTHER ABC TRANSPORTER G FAMILY MEMBER 24 36 1114 - -
Lja5g0903 1117 Pfam ABC-2 type transporter 708 1117 IPR043926 GO:0140359
Lja5g0903 1117 Gene3D - 509 744 IPR027417 -
Lja5g0903 1117 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 510 751 IPR003439 GO:0005524
Lja5g0903 1117 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 510 740 IPR027417 -
Lja5g0903 1117 SMART AAA_5 536 728 IPR003593 -
Lja5g0903 1117 Pfam ABC transporter 527 679 IPR003439 GO:0005524
Lja5g0903 1117 CDD ABCG_EPDR 508 734 - -
Lja5g0903 1117 ProSitePatterns ABC transporters family signature. 651 665 IPR017871 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0903 Lja-Chr5 8729316 8740217 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0903 525 711 Calmodulin-binding Proteins AT2G36910 28.646 1.19e-14 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0903 - - lang:109341040 1851.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0903 5 8729316 8740217 Lja1g0840 1 8207807 8215519 ECH
Lja1g0840 1 8207807 8215519 Lja5g0903 5 8729316 8740217 ECH
Lja5g2650 5 52947904 52965945 Lja5g0903 5 8729316 8740217 ECH
Lja5g0903 5 8729316 8740217 Lja5g0903 5 8729316 8740217 ECH