Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0893 ATGGGTAATGTTGAAATCCCCAATTGGCTTGAAGGGTTGCCTCTAGCACCTGAATTTCGCCCTACTGATACTGAATTCGCTGACCCAATTGCTTATATTTCAAAGATTGAGAAACAAGCTAGCAAATTTGGGATTTGTAAGATTATCCCACCATTGCCAAAGCCTTCAAAGAAGTATGTTTTCTCTAATTTGAATAGGTCCCTGTTGAAGTGCCCTGAATGGGGTTCAGATGATAGTTCCTTAGGGGTTAGTCATTCTTTGAAAACGGGGGGTTCTGGGGATAGTGGTAGTGATGGGGCGGCGCGCGCTGTGTTTACTACTAGGCATCAAGAATTGGGGAAGAGTGTGAGGAAAACCAAAGGGGCAGTTCAGAATCCTCCACCGCCGGCGAGTGTTAAGAGACAAGTATGGCAAAGTGGGGAGGTTTATACATTGGAACAATTCGAGTCCAAATCGAAGGCTTTTGCGAGAAGCGTTCTTGGTACGGCGAAGGATGTTTCCCCACTGGTTATAGAAGCTATGTTTTGGAAGGCGGCTTTGGAGAAGCCTATATATGTGGAGTATGCCAATGATGTGCCTGGCTCTGCTTTTGGAGAATCCAAGGGTCAACATTATATTAGTCATAGAAGGCGGAGAAAAAGGGCTTATTATAATAGTAGACTAGACAGTACTGATTGTAAAGAAAATAAAACGAATAGTGTAATTGATGCCCGAAATGATGAGACTAAGGGTGATTCTGCTGAAAGTCAAGCAGACATATGCTTACTGAGGTCAAAATCACCTATGGCCGTGTCAACATCCTTATCAAATGAAGCTTCACAATCATCGAAGGAAAAGATTTCAGGTGCCAGTGATGATATGCAAGGCACTGCTGGCTGGAAGCTTTCAAACAGTCCTTGGAATTTGCAAGTTATTGCACGCTCATCTGGCTCACTAACTCGCTTCATGCCAGATGATATTCCTGGTGTTACCTCACCCATGATATACATTGGCATGCTGTTTAGTTGGTTTGCCTGGCATGTTGAGGATCATGAGCTTCACAGCTTGAATTTTCTTCACACTGGTTCATCAAAGACTTGGTATGCTGTTCCTGGAGATTATGCCTTTGCTTTTGAGGAAGCCATCCGGTCAGAGGGTTATGGTGGTAATATTGATCACTTAGCTGCTTTAAAACTTTTGGGTGAGAAAACTACTCTTTTATCTCCTGAGGTAGTGATTGCATCTGGGATTCCTTGTTGCAGGTTAATACAGAATCCTGGTGAATTTGTTGTGACTTTTCCAAGAGCTTATCATGTAGGATTCAGCCATGGTTTTAACTGCGGGGAAGCTGCTAACTTTGGGACTCCACAATGGCTTAGAGTAGCTAAGGAAGCTGCTGTGCGTAGAGCTACGATGAATCATCTTCCCATGCTTTCCCATCAGCAACTGCTTTACTTGCTGACCATGTCTTTTATTTCAAGAGTGCCAAGAACACTATTACCTGGTGTGCGGAGTTCCCGTCTAAGAGACCGTCAAAAAGAAGAAAGAGAGCTTTTAGTAAAACAGGCTTTTATAGAAGATATGGTGCAGGAAAACAAGCTACTATCCATTCTTCTTGGAAAGGAAGCAACTAAACAAGTTGTTTTATGGAATGCTGATCTATTACCACATTCCAGCAAAGACTGTCAGTTGCCTGCTATAGCTTCCACCACTGGAACCTGTATGGCAGACACATCATACATTAGTTCAGCTGATAAGAATAGTCATTATCTGCTTAACGAGATGAGTTTGTATATGGAGAATCTGACGGACTCATATTTTGGTTGTGACGATCTTCCATGTCACTTCCAAACTGATTCAGGACCATTGGTTTGTGTGGGCTGCGGAATCCTTGGGTTTCCATTTATGGCTATCATACAACCAACTGAGAAAGCCATAATGGAACTTATTCAAGATAATCATCATCTAGTTCAAGATTCATCTCTGAAGTCGACTGCCTCCCTGCACAGCTCAGTCTCAAGGGATTTTTCTGTTTCTGGACTTTCTTCTGCAAAGGATTCGACACATCAATCATTAAACAAGTTCAATAAATGTTGGGACACCTCCAGTAAATTTTTGAGACCACGGATTTTCTGCCTGGAGCATGCTGTTCAGATAGTGGAGATGTTGCAGTGCAAAGGTGGAGCCAATGTGCTTTTAATTTGCCATTCAGACTATCAAAAAATAAAGGCACATTCCAGGGCAGTTGCAGAAGAGATACATGGGGTTTTTGATTATAATGAGGTTTCATTAGATATTGCATCCCCAGAAAATTTGGCTCTGATAGATCTAGCAATTGATAATGAAGAACATAATGAATGTGAAGACTGGACATCTAAACTAGGCATTAACCTCAGGTATTGTGTCAACGTAAAAAACAACACTCCATCCAAACAAGTTCCTTGGACACTAGCATCAGGGACGCTGTTCTCTGATAAACGTCCTGGTTCAGAAATTTCGTCTTTAAATTGGCAGTCACAGAGAACTCGGTCCAAGAGGTCAAATCGCTTAGCTCAAACTAAACCTTATGACAGAAGTCAGAGAAAGAAGGATGATCCATTGGAGGGAAGAGTAGATGGCTCCACCACTAAAAAGAAGCTAATTCAATATTCAAGAAGGAGGTTCAAGTCAAAGCAAAGTTGTTTGTCTGTTGCAAGTATGGTCCATGAATTCCAAGAGAAGTCTAAAAATGAGTCAGCTGTCTTGAGTGGGGATCATTCCAATTGTGTTTTGAAAGATGGGTTTAATACGGAGAATTTCAGGAGTGATTGTGTATTGTCATGTGTCTCTGCTTCTACTGCAATGACTCCAACACATACAGAAATCCAGATTGCTGAAGTGCCCACTACTATGAGATTGCACACAGGCACAGCTACGCCACCACTTTCAAATTCCTTTCCTGATGATATTTTGATGACGGAAAAAGTTGGGGCAGTGATTGGGAATAAAATCATACAGAAGTTAAATATAGATGGAGAAAATGATTTAACACCCAGTCGTTATAAGATGCATCACAACACCAATGTCTCAGAAATATGTGGCAAGGTGAGCCTGGACTGTCCGGAGTCTCCAGACAAGAAATGTTCTAGCTCACTTTCAAATGCAACAGACAGAAATGTTGACATGTTTGGAAAGAATCAAAATGCAGAAGCTATAATCATTGATAGCATAGGTAATAGCTTAGATTTGGATGATAAAGGGCATCAAGAATATCAGTCTTCGTGCAAAAGCAACAAGAAGGAAACTTTTCCATCAGCTGATTCATTGGTAAACCAACCTACTGTTGCCTCTAGGGACGGAAGTTCGGAAAGTCCATATAATAATAATTCTGCAGAAAGAATTAGCAATGCTATGCCCGTAGAGGAGACAACTGAGGAAGAAATAAATTCTAAGAGTGAAAGGGGCGAGGAACCTCCAAGTGATGATAAACCAAATGGAGAAGTTGGTGAAGTTCCAATAGAGCTTTATGCAGCTGAAGACTTGCATGATACAGTAATATTGGATGTCGAGCAGTGTCAGATCCAAAATAAGAACAGAATTAATGAGGAATCCACTTCTGGTTATGTTGCAAAAGGTGATAATAGAAGTGAAACTCTATCAGAAATAGGATGTTCTGAAGTTTCAGTTGAAACCTGTCCCGAAAAGGACTCATGTACTCATTTTACTTCAGATAGAGAAAATGAGATGGAAATCCAGCCAGTTAATTGTAGTGATGTGGAACTTTGCCCTGGTGCTCAGACAGCGTTGAAGGACTCTTCTGTATCAATCCAGGAATGTTCTCAAATTGAGAAAATGGTGTGTGGTGGAGAAAACAGAAACGGAAGCGAGGATCACTTGTCACAGGAAAATAGGGAGCTGGAAAGCTGTGAGTTGAATACAGCAGTTCCCAGATCAAATGCTGTAAAGAAAAGAAGAATGAAAGTGGAAGAGACAACAAAGAACCAACTTGATTGCCACAACTTTATTAGAGGTCCATGTGAGGGGCTGAGGCCAAGAAGAGCTGGAAAGATTGCCACAGAAAAAAGTGGGGTCAACATTAGCCAAAGTGACAAAGAAAATCCGGTAGCTAAAAGGGCACGGAGACATTCTGAAGTTTCGGTTCCTCATGAGAATAAAAAAGATGTTGTTACGAAGCCCCACAAGTGTGACCTTGATGGCTGCCATATGAGTTTCATGACCAAGGCCGAGTTACAGTTGCACAAACGTAACCTCTGCCCACATAAAGGGTGTGGTAAGAAGTTCAGTTCCCACAGATATGCTATAATTCACCAGCGTGTTCATGAAGATAAGAGGCCCCTTAAGTGCCCGTGGAAAGGTTGTTCCATGTCATTCAAGTGGGCATGGGCAAGGATAGAGCATTTACGGCTGCATACAGGCGAGAAGCCTTACCAATGCAAGGTAGAGGGATGTGGCCTTTCATTCAGGTATGTATCAGATTTCAGCAGGCACAGACGGAAAACAGGGCACTATGTGAAATCTCCTGCTTGA 4506 0.4194 MGNVEIPNWLEGLPLAPEFRPTDTEFADPIAYISKIEKQASKFGICKIIPPLPKPSKKYVFSNLNRSLLKCPEWGSDDSSLGVSHSLKTGGSGDSGSDGAARAVFTTRHQELGKSVRKTKGAVQNPPPPASVKRQVWQSGEVYTLEQFESKSKAFARSVLGTAKDVSPLVIEAMFWKAALEKPIYVEYANDVPGSAFGESKGQHYISHRRRRKRAYYNSRLDSTDCKENKTNSVIDARNDETKGDSAESQADICLLRSKSPMAVSTSLSNEASQSSKEKISGASDDMQGTAGWKLSNSPWNLQVIARSSGSLTRFMPDDIPGVTSPMIYIGMLFSWFAWHVEDHELHSLNFLHTGSSKTWYAVPGDYAFAFEEAIRSEGYGGNIDHLAALKLLGEKTTLLSPEVVIASGIPCCRLIQNPGEFVVTFPRAYHVGFSHGFNCGEAANFGTPQWLRVAKEAAVRRATMNHLPMLSHQQLLYLLTMSFISRVPRTLLPGVRSSRLRDRQKEERELLVKQAFIEDMVQENKLLSILLGKEATKQVVLWNADLLPHSSKDCQLPAIASTTGTCMADTSYISSADKNSHYLLNEMSLYMENLTDSYFGCDDLPCHFQTDSGPLVCVGCGILGFPFMAIIQPTEKAIMELIQDNHHLVQDSSLKSTASLHSSVSRDFSVSGLSSAKDSTHQSLNKFNKCWDTSSKFLRPRIFCLEHAVQIVEMLQCKGGANVLLICHSDYQKIKAHSRAVAEEIHGVFDYNEVSLDIASPENLALIDLAIDNEEHNECEDWTSKLGINLRYCVNVKNNTPSKQVPWTLASGTLFSDKRPGSEISSLNWQSQRTRSKRSNRLAQTKPYDRSQRKKDDPLEGRVDGSTTKKKLIQYSRRRFKSKQSCLSVASMVHEFQEKSKNESAVLSGDHSNCVLKDGFNTENFRSDCVLSCVSASTAMTPTHTEIQIAEVPTTMRLHTGTATPPLSNSFPDDILMTEKVGAVIGNKIIQKLNIDGENDLTPSRYKMHHNTNVSEICGKVSLDCPESPDKKCSSSLSNATDRNVDMFGKNQNAEAIIIDSIGNSLDLDDKGHQEYQSSCKSNKKETFPSADSLVNQPTVASRDGSSESPYNNNSAERISNAMPVEETTEEEINSKSERGEEPPSDDKPNGEVGEVPIELYAAEDLHDTVILDVEQCQIQNKNRINEESTSGYVAKGDNRSETLSEIGCSEVSVETCPEKDSCTHFTSDRENEMEIQPVNCSDVELCPGAQTALKDSSVSIQECSQIEKMVCGGENRNGSEDHLSQENRELESCELNTAVPRSNAVKKRRMKVEETTKNQLDCHNFIRGPCEGLRPRRAGKIATEKSGVNISQSDKENPVAKRARRHSEVSVPHENKKDVVTKPHKCDLDGCHMSFMTKAELQLHKRNLCPHKGCGKKFSSHRYAIIHQRVHEDKRPLKCPWKGCSMSFKWAWARIEHLRLHTGEKPYQCKVEGCGLSFRYVSDFSRHRRKTGHYVKSPA* 1502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0893 1501 MobiDBLite consensus disorder prediction 1082 1123 - -
Lja5g0893 1501 MobiDBLite consensus disorder prediction 1359 1380 - -
Lja5g0893 1501 ProSiteProfiles Zinc finger C2H2 type domain profile. 1469 1500 IPR013087 -
Lja5g0893 1501 ProSiteProfiles JmjN domain profile. 16 57 IPR003349 -
Lja5g0893 1501 Pfam jmjN domain 17 50 IPR003349 -
Lja5g0893 1501 SUPERFAMILY beta-beta-alpha zinc fingers 1449 1492 IPR036236 -
Lja5g0893 1501 ProSiteProfiles JmjC domain profile. 294 463 IPR003347 -
Lja5g0893 1501 MobiDBLite consensus disorder prediction 1074 1154 - -
Lja5g0893 1501 Gene3D Classic Zinc Finger 1408 1494 - -
Lja5g0893 1501 MobiDBLite consensus disorder prediction 112 134 - -
Lja5g0893 1501 Pfam JmjC domain, hydroxylase 328 446 IPR003347 -
Lja5g0893 1501 ProSiteProfiles Zinc finger C2H2 type domain profile. 1439 1468 IPR013087 -
Lja5g0893 1501 SMART JmjN_1 15 55 IPR003349 -
Lja5g0893 1501 MobiDBLite consensus disorder prediction 821 866 - -
Lja5g0893 1501 ProSitePatterns Zinc finger C2H2 type domain signature. 1441 1463 IPR013087 -
Lja5g0893 1501 SMART cupin_9 294 463 IPR003347 -
Lja5g0893 1501 MobiDBLite consensus disorder prediction 266 286 - -
Lja5g0893 1501 Gene3D Cupin 9 467 - -
Lja5g0893 1501 SMART c2h2final6 1469 1495 IPR013087 -
Lja5g0893 1501 SMART c2h2final6 1386 1408 IPR013087 -
Lja5g0893 1501 SMART c2h2final6 1439 1463 IPR013087 -
Lja5g0893 1501 SMART c2h2final6 1409 1433 IPR013087 -
Lja5g0893 1501 SUPERFAMILY Clavaminate synthase-like 295 459 - -
Lja5g0893 1501 SUPERFAMILY beta-beta-alpha zinc fingers 1410 1446 IPR036236 -
Lja5g0893 1501 MobiDBLite consensus disorder prediction 843 866 - -
Lja5g0893 1501 ProSitePatterns Zinc finger C2H2 type domain signature. 1411 1433 IPR013087 -
Lja5g0893 1501 PANTHER LYSINE-SPECIFIC DEMETHYLASE ELF6-RELATED 1 1490 - -
Lja5g0893 1501 MobiDBLite consensus disorder prediction 1130 1154 - -
Lja5g0893 1501 ProSiteProfiles Zinc finger C2H2 type domain profile. 1409 1438 IPR013087 -
Lja5g0893 1501 PANTHER LYSINE-SPECIFIC DEMETHYLASE 1 1490 - -
Lja5g0893 1501 ProSitePatterns Zinc finger C2H2 type domain signature. 1471 1495 IPR013087 -
Lja5g0893 1501 MobiDBLite consensus disorder prediction 821 839 - -
Lja5g0893 1501 MobiDBLite consensus disorder prediction 1354 1380 - -
Lja5g0893 1501 MobiDBLite consensus disorder prediction 266 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0893 Lja-Chr5 8651748 8661050 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0893 1 880 C2H2 Transcription Factor Family AT5G04240 55.457 0.0 967
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja5g0893 JmjC 9.6e-35 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0893 - - gmx:100799861 2146.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0893 5 8651748 8661050 Lja5g0893 5 8651748 8661050 ECH