Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0892 ATGAAGTTCAAGCTTCTCAAAAGTAACTCAAGGGAGCTTTCTAAATTCAGAAAGGTCAGAGCTAATAATGTTCACAAATGTGCAATTCTGGAACATGTTTGCAAATGGGTTTCATCATCACTCTGTTTCTCTCCAGAGAAGTCACACTCATATGTGCCCAAAGATGTCCCAAAAGGCCACCTTGTTGTCTATGTTGGTGAGGATTGCAAGAGATTTGTCATCAAGGTGGGTACACTCCATCATCCACTCTTCAAGGCTCTGCTGGAACATGCAGAGGATGTGTTTGGATTCACCAATGATTCTAAACTCCGCATTCCTTGCAATGAGAGCATTTTCCTTGACATTCTTCATTGTGCCGGTGACCTTTTCCAAGATCAGAGGCTCTTAATATGCTAG 396 0.4217 MKFKLLKSNSRELSKFRKVRANNVHKCAILEHVCKWVSSSLCFSPEKSHSYVPKDVPKGHLVVYVGEDCKRFVIKVGTLHHPLFKALLEHAEDVFGFTNDSKLRIPCNESIFLDILHCAGDLFQDQRLLIC* 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0892 131 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 6 131 IPR003676 GO:0009733
Lja5g0892 131 Pfam Auxin responsive protein 45 117 IPR003676 GO:0009733
Lja5g0892 131 PANTHER SMALL AUXIN-UP RNA-RELATED 6 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0892 Lja-Chr5 8637930 8638325 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0892 42 125 Calmodulin-binding Proteins AT5G20810 46.429 1.46e-18 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0892 K14488 - mtr:MTR_1g094750 149.443