Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0891 ATGGAGTATTCCAATGGCAATGGCAATCATGGGTCATTGAACCTTTGCAATGGTGGTGGGAAAAGCAATACTCACCATCATCATCATGATGATCCTTTGAACTGGGGTGCGGCTGCGGAGGCTTTGAGAGGCAGCCACCTTGATGAGGTGAAGCGGATGGTGGAGGAGTACCGGAAACCATTGGTGATGTTGGGCGGCAAGACGCTCACCATACCTCAGGTGGCCGCCGTGGCCACCCGCTCGAGTGACGTGGTGGTGGAGCTGGCTGAGGAGACTCAGGCCGCCGTCAAGGCTAGCAGTGACTGGGTCATGGATGGCATGAACAAAGGCACCGATAGCTATGGAGTTACCACGGGGTTCGGTGCAACCTCTCATAGGAGAACCAAACAGGGTGTTGCTCTCCAAAACGAACTAATTAGGTTTTTGAATTCTGGCATATTTGGCAATGGCACAGAATCAAGCCACACATTGCCACACTCAGCCACAAGAGCAGCCATGCTGGTTAGAATCAACACCTTGCTTCAAGGATATTCAGGAATCAGATTTGAGCTCATGGAGACAATGGCCAAGTTTCTAAACCAAAACATAACCCCATGCCTCCCTCTAAGAGGCACAATCACTGCATCAGGTGACCTGGTTCCTCTGTCCTATGTTGCTGGTCTTTTGATTGGGAGGCCAAACTCAAAATCCATTGGACCTGATGGACAAGTTCTAACTGCTAAAGAGGCATTTCAACTAGCTGGGATTGAAGGTGGTTTCTTTGAGTTACAACCTAAAGAGGGTTTGGCACTAGTGAATGGAACTGCAGTAGGATCTGGTTTAGCTTCCTTAGTTCTTTTTGAAGCAAACACACTTGCTGTGCTCTCAGAAGTTATATCAGCAATTTTTGCTGAAGTTATGCTTGGGAAACCAGAGTTCACAGACCACTTGACTCATAAATTGAAGCACCACCCTGGCCAGATTGAAGCTGCAGCTATAATGGAGCATATTCTAGAGGGAAGTTCATTTATTAAGGCTGCACAGAAGGTGCATGAGATGGATCCACTTCAGAAGCCTAAACAAGATAATTATGCTCTCAGAACATCTCCTCAGTGGCTTGGACCCCAGATTGAGGTAATCAGGCATGCAAGCAAGATGATCGAGAGGGAGATAAACTCGGTGAACGACAACCCTCTCATTGATGTTTCAAGGAACAAGGCACTTCATGGAGGGAATTTCCAGGGCACCCCAATTGGTGTTTCCATGGATAACACTCGTCTCGCCATTGCTGCAATTGGGAAACTCATGTTTGCTCAGTTCACCGAGCTCGTGAACGACTTTTCCAACAACGGTTTGCCTTCAAATTTAACCGCGAGCCGCAACCCGAGCTTGGATTACGGCTTCAAAGGGGCGGAAATTGCAATGGCATCCTACTGCTCAGAGCTTCAATACCTTGCTAACCCTGTCACCAACCATGTCCAGAGTGCTGAGCAGCATAACCAGGATGTGAACTCTTTAGGCCTGATTTCCTCAAGAAAGACGGCTGAAGCGGTCGACATATTGAAGCTCATGTCCTCCACTTTCTTAGTTGCATTGTGCCAAGCCATTGATTTGAGGCATTTGGAGGAAAACTTGAGGAGCACTGTGAAGAACACTGTGAGCCAAGTGGCAAAGAGAGTTCTAACAGTTGGTCTCAATGGTGAGTTGCATCCATCCAGGTTCTGTGAAAAGGACTTGCTCAAAGTTGTCGACCGCGAGCATGTCTTCGCTTATGTTGATGACCCCTGCAGTGCAACCTACCCTCTAATGCAGAAGTTGAGACATGTCCTGGTTGATCATGCACTGCAAAATGGTGACAAGGAGGCAAATTCAAGCACCTCAATTTTCCAAAAGATTGGAGCTTTTGAGGAAGAGCTCAAGGCCCTTCTGCCCAAAGAGGTTGAAAGTGCAAGGATTGAAGTTGAGAATGGAACTCCTGCTTTTCCTAACAGAGTTAAGGAATGCAGGTCTTATCCATTATACAAGTTTGTGAGGGAAAGTTTGGGGACAGCTTTGCTGACAGGTGAGAAAGTGAGGTCACCTGGTGAGGAATGTGACAAGGTGTTCTCTGCTTTGTGTGATGGAAGGTTTATTGACCCAATGATGGACTGTCTTAAGGAGTGGAATGGTGCTCCTCTACCCATATGCTAA 2169 0.4744 MEYSNGNGNHGSLNLCNGGGKSNTHHHHHDDPLNWGAAAEALRGSHLDEVKRMVEEYRKPLVMLGGKTLTIPQVAAVATRSSDVVVELAEETQAAVKASSDWVMDGMNKGTDSYGVTTGFGATSHRRTKQGVALQNELIRFLNSGIFGNGTESSHTLPHSATRAAMLVRINTLLQGYSGIRFELMETMAKFLNQNITPCLPLRGTITASGDLVPLSYVAGLLIGRPNSKSIGPDGQVLTAKEAFQLAGIEGGFFELQPKEGLALVNGTAVGSGLASLVLFEANTLAVLSEVISAIFAEVMLGKPEFTDHLTHKLKHHPGQIEAAAIMEHILEGSSFIKAAQKVHEMDPLQKPKQDNYALRTSPQWLGPQIEVIRHASKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFTELVNDFSNNGLPSNLTASRNPSLDYGFKGAEIAMASYCSELQYLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLRSTVKNTVSQVAKRVLTVGLNGELHPSRFCEKDLLKVVDREHVFAYVDDPCSATYPLMQKLRHVLVDHALQNGDKEANSSTSIFQKIGAFEEELKALLPKEVESARIEVENGTPAFPNRVKECRSYPLYKFVRESLGTALLTGEKVRSPGEECDKVFSALCDGRFIDPMMDCLKEWNGAPLPIC* 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0891 722 Gene3D - 22 268 IPR024083 -
Lja5g0891 722 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 31 712 IPR005922 GO:0005737|GO:0006559|GO:0016841
Lja5g0891 722 Gene3D - 535 656 IPR023144 -
Lja5g0891 722 Gene3D Fumarase/aspartase (Central domain) 269 717 - -
Lja5g0891 722 SUPERFAMILY L-aspartase-like 31 722 IPR008948 GO:0003824
Lja5g0891 722 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 22 722 - -
Lja5g0891 722 CDD PAL-HAL 67 532 IPR001106 -
Lja5g0891 722 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 204 220 IPR022313 GO:0016841
Lja5g0891 722 Pfam Aromatic amino acid lyase 69 542 IPR001106 -
Lja5g0891 722 PANTHER HISTIDINE AMMONIA-LYASE 22 722 IPR001106 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0891 Lja-Chr5 8627176 8633595 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0891 4 722 Monolignol Biosynthesis Gene Families AT2G37040 80.668 0.0 1228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0891 K10775 - gmx:100818777 1253.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0891 5 8627176 8633595 Lja1g0850 1 8282377 8290127 ECH
Lja1g0851 1 8286825 8318153 Lja5g0891 5 8627176 8633595 ECH
Lja5g2657 5 53036812 53041051 Lja5g0891 5 8627176 8633595 ECH
Lja5g0891 5 8627176 8633595 Lja5g0891 5 8627176 8633595 ECH