Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0889 ATGCTTATATTTGTACTAAAGTCTGACTTTCTTTGGAGAAGAAAAGACCACTCTTTCATCACTTGCAATGATGAAGGTGCTCTTTACTTGGAAGCCAATGTGAACCATAGCATGGTTGAGTTCCTCACACCACCTAAAATAGAACATCTCAACAAACTGCTTCCTTGTGAGCCTAATAAACTGCACCAAGATGGAGAATCTTTACCCCAAGTACTTGTGCAAGTTAACACATTCACCTGTGGTGGAATAGCTATAGGCACATGCAATCTCCACATCCTCCTTGATGGTTGCTCTGGCAGCCTCTTTCAAGCGACTTGGGCCGCCATCTGCCGTGGCTCTAGAGAGGGAATGCCACCACCTGATTTCTGTTCTGCTTCCTCTTTCTTCCCACCAGTGAATCATTTGAGTTTGCCTCATCATATTGCTCAGAGTAATGAGGACTCTGACATACAAAAAAAGTGCACCACAAGAAGATTTGTGTTTGATGCAGAATCAATCAACACTCTAAGATCTGAAGCAAAAGATGATGGTGATGATGAAAGCTCAAAATCCCCTACAAGGTATGAAGCACTAGCTGCTTTTATTTGGAAACACATGACTCTGGCTTGCAAGGTGGAATCTGGTGATGTCACAAGACCAGCATTGGCTATTCATATAGTGGACATGAGGAGGAGGATGGGTGAGCCTTTCTCTAGATACACCATTGGCAACATTTTGTGGCCAGTGATGGTGTTTTCTGAAACCATTCATGCAGAAACTAATATCAAACACTTGGTGGACATTGCAAGAGAGAAATTTGGGAAGCTCACAAGGGAATTATTCTTAAGAGTGAAAAATGATCCAAGCATACTTGGCAGCAATGAGTGTGTGGATCTGCCTCAAGGTATTGAAACAAGAAATCCAATTCCATTTGTGTTGACAAGTTGGTGTGGTTTGAATTTGGCTGAGCTGGATTTTGGTTGGGGGAAGCCATTGTGGGTTGGTGTTAGAGGAGGTGATCAAGAAACTCTCCCCAATGTGGCTGTTATTATGGAAACAGATGAAGGCATGGAAGCTTGGTTGACTATGGAAATTCAGCATATAGCTATGTTGGAAAAAGATGTGGAGTTTCTCAAATTTGCTTTGCCTAATCCTATTGTTTCAAACACATGA 1152 0.4219 MLIFVLKSDFLWRRKDHSFITCNDEGALYLEANVNHSMVEFLTPPKIEHLNKLLPCEPNKLHQDGESLPQVLVQVNTFTCGGIAIGTCNLHILLDGCSGSLFQATWAAICRGSREGMPPPDFCSASSFFPPVNHLSLPHHIAQSNEDSDIQKKCTTRRFVFDAESINTLRSEAKDDGDDESSKSPTRYEALAAFIWKHMTLACKVESGDVTRPALAIHIVDMRRRMGEPFSRYTIGNILWPVMVFSETIHAETNIKHLVDIAREKFGKLTRELFLRVKNDPSILGSNECVDLPQGIETRNPIPFVLTSWCGLNLAELDFGWGKPLWVGVRGGDQETLPNVAVIMETDEGMEAWLTMEIQHIAMLEKDVEFLKFALPNPIVSNT* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0889 383 Gene3D - 151 373 IPR023213 -
Lja5g0889 383 Gene3D - 8 141 IPR023213 -
Lja5g0889 383 PANTHER HXXXD-TYPE ACYL-TRANSFERASE FAMILY PROTEIN 13 378 - -
Lja5g0889 383 PANTHER F21J9.9 13 378 - -
Lja5g0889 383 Pfam Transferase family 15 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0889 Lja-Chr5 8603050 8605264 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0889 20 366 Monolignol Biosynthesis Gene Families AT5G48930 23.913 4.16e-20 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0889 - K13065 gmx:102668997 615.15