Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0887 ATGGGAAGCAAATGGAAGAAAGCTAAGGTGGCTTTAGGTCTCAATCTTTGCATGTTTGTTCCCAGAACTCTAGACGACGAATCGCCGCCGCCGTCCACGGTGGTTTCTGAGAGGTTGTCGGACGCTTCTCTGCTCTCTTCCCGGCAAACCACGCCGGTGCAGTCTTTCAACGGCTTGAAGCTGTCCAAAAGTAGCAGCAAATCTTCCAAGCAAACCTGCTCAATATGCTTAAACAAAATGAAGCAAGGATCTGGCCATGCTATATTCACTGCAGAATGTTCACATTCATTCCATTTCCACTGCATTGCTTCAAATGTGAAACATGGAAACCAAATATGTCCAGTGTGCAGAGCAAAGTGGAAGGAAATACCCTTATCCGGCGCCAGTTTGGATCCTATCCAGGGAAGGGTTTCACCTAGTCCTATAAATTGGCCCCAAAATGACGCTTTGATGGCTGTGGTCCACCGCCTACCTTTACCCCATCCTCGCCGAGATTTGAATAGGAGGCATATTGTGCCACTTTATCAAGCTTCTGAACCAGGTGTATTCAATGACGATGAACCCTTGAATCATCAACCTCAACCTGCATTACCTGAGAGAAGCACTTCAGGTAAGAGTACTGAAGATACTGATTCTGTTCGAGCAATGGAGATTAAAACGTACCCCGAAGTGTCAGCTACTCCACGGGCCAAAACTCACTCTAACTTCACAGTTTTGGTTCATCTCAAAGCTACTGCTGCTGCAGCTGCCGAGAGACAAAACCTTAGTAGAAACCAGGCTAGCTTGACACAGATTTCTCAGACACCGCGTGCCCCTGTTGACTTGGTCACTGTGCTTGATGTCAGTGGTAGCATGAGTGGAACTAAGCTTGCGCTATTGAAAAGAGCCATGGGGTTTGTTATACAGAATCTAGGCTCTAACGACAGGCTCTCTGTTATTGCTTTCTCTTCCACGGCTCGCCGCCTCTTTCCACTATCTAGGATGACCGATTCTGGACGGCAACTGGCATTACAAGCTGTGAATTCCTTGGTTGCTAATGGGGGTACCAATATTGCTGAAGGGCTGAGAAAAGGCACTAAGATAGTAGAAGACCGAAAAGAAAAGAATCCAGTTGCCAGTATCATACTGTTGTCTGATGGGCAGGATAATTACACTGTCAGTGGCTCCGGAACTGACCAACCTCAACCGAACTACCATTTGCTTGTGCCTAATTCAATCAGTGGCCGTGATAATTCAGGATTTCAAATTCCGGTGCATGCTTTCGGATTTGGTGCTGATCATGATGCTTCATCAATGCACTCAATTTCAGAGATCTCCGGTGGCACATTTTCTTTCATCGAGACTGAAGCTGTGTTGCAGGATGCATTTGCACAATGCATTGGAGGACTTCTGAGTGTTGTTGTCCAGGAGCTACAAGTGGGAATTGAGTGTGTACACCCAAGCCTCGGTCTTGTCTCACTTAAAGCAGGAAGTTACCCGAGCCGGTTGGTAGCTGATGGCCGCAAAGGGTTTATTGATGTTGGAGACTTGTATGCTGATGAAGAGAGGGATTTTCTTGTTTCTGTTAATGTCCCTGCTACTTCAGGCAATGAAACATCATTGATAAAGGTCACGTGTGCTTACAAGGATCCCTTGACTCAAGAAATAGCAGTGTTAGAAAGTGAAGAAGTGAAGATTGAGAGGCCTGAAATAGCTGGACAGGTTGTGATGTCACTTGAAGTGGACAGACAGCGCAACCGGCTCCAAGCAGCTGAGGCAATGGCCCAGGCACGTGTTGCAGCTGAACAGGGAGACCTAACAGGAGCAGTGTCAATCCTTGAAAACTGTCGGAAGACGCTTTCTGAGACCGTATCGGCCAAATCTCATGACCGTCTTTGCATGGCGTTGGATGCTGAACTAAAGGAAATGCAGGAACGAATGGTGAGTAGGCATGTGTATGAAGCATCTGGAAGAGCATACATACTTTCCGGATTGAGCTCACACTCATGGCAACGAGCAACTGCAAGAGGCGATTCCACGGATCAGTCGAGCCTTGTTCAGGCTTATCAGACCCCATCAATGGTTGAGATGCTTACTCGATCTCAGGCCATGCTACTAGGTAGTCCATCAGGTCAGAGGTTTCTCCAGCCACTGTTGTCATTGAGATCACAACCAAGCCCAAGGTAG 2166 0.4732 MGSKWKKAKVALGLNLCMFVPRTLDDESPPPSTVVSERLSDASLLSSRQTTPVQSFNGLKLSKSSSKSSKQTCSICLNKMKQGSGHAIFTAECSHSFHFHCIASNVKHGNQICPVCRAKWKEIPLSGASLDPIQGRVSPSPINWPQNDALMAVVHRLPLPHPRRDLNRRHIVPLYQASEPGVFNDDEPLNHQPQPALPERSTSGKSTEDTDSVRAMEIKTYPEVSATPRAKTHSNFTVLVHLKATAAAAAERQNLSRNQASLTQISQTPRAPVDLVTVLDVSGSMSGTKLALLKRAMGFVIQNLGSNDRLSVIAFSSTARRLFPLSRMTDSGRQLALQAVNSLVANGGTNIAEGLRKGTKIVEDRKEKNPVASIILLSDGQDNYTVSGSGTDQPQPNYHLLVPNSISGRDNSGFQIPVHAFGFGADHDASSMHSISEISGGTFSFIETEAVLQDAFAQCIGGLLSVVVQELQVGIECVHPSLGLVSLKAGSYPSRLVADGRKGFIDVGDLYADEERDFLVSVNVPATSGNETSLIKVTCAYKDPLTQEIAVLESEEVKIERPEIAGQVVMSLEVDRQRNRLQAAEAMAQARVAAEQGDLTGAVSILENCRKTLSETVSAKSHDRLCMALDAELKEMQERMVSRHVYEASGRAYILSGLSSHSWQRATARGDSTDQSSLVQAYQTPSMVEMLTRSQAMLLGSPSGQRFLQPLLSLRSQPSPR* 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0887 721 ProSiteProfiles VWFA domain profile. 274 460 IPR002035 -
Lja5g0887 721 Pfam von Willebrand factor type A domain 274 457 IPR002035 -
Lja5g0887 721 ProSiteProfiles Zinc finger RING-type profile. 73 117 IPR001841 -
Lja5g0887 721 Pfam VWA / Hh protein intein-like 623 695 IPR032838 -
Lja5g0887 721 Gene3D von Willebrand factor, type A domain 274 461 IPR036465 -
Lja5g0887 721 CDD vWA_C3HC4_type 273 447 - -
Lja5g0887 721 Pfam Ring finger domain 72 117 IPR001841 -
Lja5g0887 721 SMART ring_2 73 116 IPR001841 -
Lja5g0887 721 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 42 699 - -
Lja5g0887 721 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 48 124 IPR013083 -
Lja5g0887 721 MobiDBLite consensus disorder prediction 181 213 - -
Lja5g0887 721 SMART VWA_4 272 459 IPR002035 -
Lja5g0887 721 Coils Coil 619 639 - -
Lja5g0887 721 SUPERFAMILY vWA-like 269 460 IPR036465 -
Lja5g0887 721 CDD RING-H2 73 117 - -
Lja5g0887 721 SUPERFAMILY RING/U-box 69 123 - -
Lja5g0887 721 PANTHER OS10G0464500 PROTEIN 42 699 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0887 Lja-Chr5 8579367 8583779 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0887 31 117 C3H Transcription Factor Family AT1G57730 32.258 2.92e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0887 - - gmx:100818239 1176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0887 5 8579367 8583779 Lja5g0887 5 8579367 8583779 ECH