Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0882 ATGGTTGGACCAAACTTCATGGACGAGTTAGACTGCGGAAGCTTCTTTGACCACATCGACGACCTCCTCGATTTCCCCGTCGAGGACGTCGACGGCACCGCCACCACCTTACCATCCGCCGCCGCCGCAGCCGCGAACTGCACCTCCCTAGCCAGCATCTGGCCCCCAGAAACCGACTCGTTTCCCGGCTCCGACTCGGTGTTTTCCGGCAACAGCGGCTCGGACCTCTCGGCGGAGCTCTCTGTTCCGTATGAAGACATTGTCCAATTGGAATGGCTGTCAAACTTTGTGGAGGACTCATATGGGGGTAGCCTCACCATGAAGAAGGTGGAGCATCAGCAACCATCATCCACCATCACAACCAAAGAGGATTCAGTGCACAACCAGTTCCAGACATCAAGCCCAGTTTCTGTCTTAGAAAGCAGCAGCTCCTGCTCCGGCGGGAAGCCGGCAGAGATTTACATCCCTGTCCCTTGTGGGCGCGCACGCAGCAAGCGTCCGCGCCCTGCGAGCTTCAATCCTCGCTCTGCCATGCAGCTCATTTCCCCTGCTTCCTCTTTTATTGGGGAGAACAACACCATGAAGCCTAATTATCATCATCATGTCAGGACCTCTTCAGATTCTGAGAATTTTGCTGAGTCTCAGCCTGTGATTACCAAGATGATGATGCCAAAACAGGCTTCTGGGGAGCCTAAGAAGAAGAAGAAGATCAAGGTTCCACTTCCACTTGCTCCATCTGATGGAAACAATATTCAGAATGGTTCACAACCGGTCAGGAAATGCATGCATTGTGAGATCACCAAGACTCCTCAGTGGAGGGCAGGGCCAATGGGGCCGAAAACACTCTGCAATGCTTGCGGCGTTCGCTACAAGTCTGGCCGCCTCTTCCCTGAGTACCGGCCTGCCGCCAGCCCGACATTCTGCCCCGCCGTGCACTCGAATTCCCATAAGAAGGTCCTGGAAATGAGATGCAAGGGTGAGGATTCTGGCCTTGCAGATCAGCCTGAACTTATTCCAAACACTAACAGCAGCCTCACCCTGGAGGAATACATGTGA 1056 0.5417 MVGPNFMDELDCGSFFDHIDDLLDFPVEDVDGTATTLPSAAAAAANCTSLASIWPPETDSFPGSDSVFSGNSGSDLSAELSVPYEDIVQLEWLSNFVEDSYGGSLTMKKVEHQQPSSTITTKEDSVHNQFQTSSPVSVLESSSSCSGGKPAEIYIPVPCGRARSKRPRPASFNPRSAMQLISPASSFIGENNTMKPNYHHHVRTSSDSENFAESQPVITKMMMPKQASGEPKKKKKIKVPLPLAPSDGNNIQNGSQPVRKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFCPAVHSNSHKKVLEMRCKGEDSGLADQPELIPNTNSSLTLEEYM* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0882 351 Gene3D - 255 305 IPR013088 GO:0006355|GO:0008270
Lja5g0882 351 PANTHER GATA TRANSCRIPTION FACTOR 8 1 348 - -
Lja5g0882 351 MobiDBLite consensus disorder prediction 224 254 - -
Lja5g0882 351 ProSitePatterns GATA-type zinc finger domain. 261 286 IPR000679 GO:0006355|GO:0043565
Lja5g0882 351 MobiDBLite consensus disorder prediction 330 351 - -
Lja5g0882 351 Pfam GATA zinc finger 261 294 IPR000679 GO:0006355|GO:0043565
Lja5g0882 351 PIRSF Txn_fac_GATA_plant 3 344 IPR016679 GO:0003677|GO:0005634|GO:0045893
Lja5g0882 351 CDD ZnF_GATA 260 317 IPR000679 GO:0006355|GO:0043565
Lja5g0882 351 ProSiteProfiles GATA-type zinc finger domain profile. 255 291 IPR000679 GO:0006355|GO:0043565
Lja5g0882 351 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 259 318 - -
Lja5g0882 351 MobiDBLite consensus disorder prediction 335 351 - -
Lja5g0882 351 SMART GATA_3 255 305 IPR000679 GO:0006355|GO:0043565
Lja5g0882 351 PANTHER GATA TRANSCRIPTION FACTOR 1 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0882 Lja-Chr5 8511665 8515232 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0882 19 327 C2C2-Gata Transcription Factor Family AT4G32890 35.938 1.12e-44 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lja5g0882 GATA 6e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0882 - - gmx:100815693 501.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0882 5 8511665 8515232 Lja5g0882 5 8511665 8515232 ECH