Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0881 ATGTTTGTGGTGATGGATTCCATGGAGAGAACAACAGAAAGGTGTTTAGATTCTCAGCTATGGCATGCCTGTGCTGGTGCCATGGTTCAAATGCCACCTCTCAACACCAAAGTCTTCTACTTCCCTCAGGGACACGCAGAGCATGCTCATGGTGGAGGCAAAATCAATTTTGGCCAACACAGAGTTCCACCTCTCATCCCTTGCAGGGTCTCTGCCATGAAATACATGGCAGACCCTGACACAGATGAGGTGTTTGTCAAAATGAGACTAACCCCTTTGAGAGAACATGAATTGGATTTGGAAGAAAATGATTGTAGCAATTTCTTGGGAGGGAACAACAACAGTGAAGAAAAAGTGCCTAGTTCTTTTGCCAAGACTTTGACTCAATCTGATGCTAACAATGGTGGAGGCTTTTCTGTTCCTCGTTATTGTGCTGAGACCATTTTTCCAAGGTTGGATTATTCAGCTGAGCCTCCTGTTCAGACCATTATTGCCAAGGACATGCATGGACAGTGCTGGAAGTTCAGGCATATCTATAGAGGCACACCTAGGAGGCATCTTTTGACCACTGGTTGGAGCAATTTTGTCAACCACAAGAGGCTTGTTGCAGGGGATTCCATTGTGTTTCTGAGAGCTGAAAATGGAGATCTTTGTGTTGGGATTAGGAGGGCTAAGAAGGGGATTGGTGGTGGCACTGAGTTGTTTTCCTCTGGTTGGAACAACAACCAGGTAGCTCCTACTATGTTTGGTTCTGGTTTCTTGTGCAAGAGTGAGAACAATAGGAAAAATGGGGATGAGTTTTTTATGGGAAGAGTTACAGGTGAATCTGTTGTTGAGGCTGTGAGTTCTGCTGTTAATGGAAGACCCTTTGAGGTTGTGTACTATCCAAGAGCTAGCACACCTGAGTTTTGTGTCAAGGCTTCTTCTGTGAAGGCTTCAATGCAAATTCAATGGTGTTCTGGGATGAGATTCAAAATGCCCTTTGAAACTGAGGATTCTTCCAGGATCAGCTGGTTCATGGGAACTATTTCTTCTGTTTCAGTTGCAGATCCCATTCGTTGGCCTGATTCTCCTTGGCGTCTTCTTCAGGTAGTGTGGGATGAACCAGATTTGCTTCAAAATGTCAAGTCTGTGAACCCTTGGCTGGTTGAACTAGTCTCAAACATGCCCACCTTCAACCTCTCTCCATTCTCACCTCCAAGAAAGAAACAAAGGCTCATACAGGACCCATATTTTCACCTCATCAACCAACTTCCAGTGCCATCATCACTCTCCAACAATCTTCTCAGTTACACTAACTCTCTGTGTAACATGAAAGATAATAATTACAGCTCTGCAGGCATACAGGGAGCCAGGCATGTTCAATGTGGACCAACTCCATCATCTGATTTTCCCTTCAAAATCCTGCAACCAGATTTCTCAAGGTTTGACCATGAAACTCAACCTATTAGGCCACATTGTGGAAATGGAAACTCATACAAGAGCAGCACTAAGACCAATGTTGACATTTCTTGCTTGTTGACTGTGGGAAATCATGGCCAGAGTTTTAAGGAATCCAATGAAGTTAAAGCACCACACATCTTGTTATTTGGAAAAATCATTCACACAGAGCAGAAGAGTTCAAACAGCTTGAACTCTTCTGCTAGCACCAATGGGAACAGTTTATCTGAAGGGTCTAATTCCATGAAGACATCATCTAATGCTTCTCATGACTTGGGTTTTGCTTTGCATCAAAACAGCCCAATTGAAAACTCTTCTGATGGAGGGTCTCACTGGTACAAAGATCAACACAACTCTGATCTTGGTACCGAAAACGTTACCTCACTATGCGTGGCTTTGTAG 1842 0.4376 MFVVMDSMERTTERCLDSQLWHACAGAMVQMPPLNTKVFYFPQGHAEHAHGGGKINFGQHRVPPLIPCRVSAMKYMADPDTDEVFVKMRLTPLREHELDLEENDCSNFLGGNNNSEEKVPSSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTIIAKDMHGQCWKFRHIYRGTPRRHLLTTGWSNFVNHKRLVAGDSIVFLRAENGDLCVGIRRAKKGIGGGTELFSSGWNNNQVAPTMFGSGFLCKSENNRKNGDEFFMGRVTGESVVEAVSSAVNGRPFEVVYYPRASTPEFCVKASSVKASMQIQWCSGMRFKMPFETEDSSRISWFMGTISSVSVADPIRWPDSPWRLLQVVWDEPDLLQNVKSVNPWLVELVSNMPTFNLSPFSPPRKKQRLIQDPYFHLINQLPVPSSLSNNLLSYTNSLCNMKDNNYSSAGIQGARHVQCGPTPSSDFPFKILQPDFSRFDHETQPIRPHCGNGNSYKSSTKTNVDISCLLTVGNHGQSFKESNEVKAPHILLFGKIIHTEQKSSNSLNSSASTNGNSLSEGSNSMKTSSNASHDLGFALHQNSPIENSSDGGSHWYKDQHNSDLGTENVTSLCVAL* 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0881 613 SUPERFAMILY DNA-binding pseudobarrel domain 122 224 IPR015300 -
Lja5g0881 613 SMART B3_2 123 225 IPR003340 GO:0003677
Lja5g0881 613 Gene3D - 121 225 IPR015300 -
Lja5g0881 613 MobiDBLite consensus disorder prediction 540 598 - -
Lja5g0881 613 Pfam B3 DNA binding domain 123 224 IPR003340 GO:0003677
Lja5g0881 613 MobiDBLite consensus disorder prediction 540 592 - -
Lja5g0881 613 Gene3D - 317 391 - -
Lja5g0881 613 PANTHER AUXIN RESPONSE FACTOR 16 8 583 - -
Lja5g0881 613 CDD B3_DNA 122 223 IPR003340 GO:0003677
Lja5g0881 613 Pfam Auxin response factor 280 363 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lja5g0881 613 ProSiteProfiles B3 DNA-binding domain profile. 123 225 IPR003340 GO:0003677
Lja5g0881 613 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 8 583 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0881 Lja-Chr5 8489197 8492954 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0881 1 599 B3 DNA Binding Superfamily AT4G30080 55.921 0.0 598
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lja5g0881 B3 5.4e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0881 - - gmx:100803053 902.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0881 5 8489197 8492954 Lja1g0858 1 8432204 8436441 ECH
Lja1g0858 1 8432204 8436441 Lja5g0881 5 8489197 8492954 ECH
Lja5g2666 5 53206624 53209573 Lja5g0881 5 8489197 8492954 ECH
Lja5g0881 5 8489197 8492954 Lja5g0881 5 8489197 8492954 ECH