Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0878 ATGGTTCTCAAAGAGAAGCTCACGGCCCACCGCGAATGGATCAGTGACTATTGGGACCCACCAATCCAACAACCAAAGCAGGTAAGGGAACAAGGGAAGTTCCTTATTCGGTACCAGGAGCTGCATGATGATAACAAAGTGCTTATTGAAGAGGATATTGATGACAAACACATAAGACCTTCTCCGCCATTTACTGATGCTAAATTTAAACTCCTTGACAAAGTAGATGCTCTTGTCCTTGATGGTTGGAGGATTGGTGGATGGAGTAATCATCTACGCTCTATAAAGACATTCCATTTCATAGTAAAAGCAAGTGAAAGCAGCCTCCTTCAAATTGACAGTAATGACAACCTTTTACATGCTAAAGTCCATCTAAATGGCATGGGTCATCTGTTGTGGGTTAAAGCATCAGCTCAGTTTTCAGGGACCTCTATCATGAATTGTTGGGATGATATCTGCTCTAATTTGTGTGTCAGAGAAGTGAGTTTGCTCGACACTTCAACGCGGAATGATATACCTCTTAGAGTACTTTTTGGATTATCAAAGTTTGGTGGTTTCAGAACTTGGTTTGAACAGTTTGGATATCATGTATCCCAGGGTTGTTTTGGCACAACCATTGCCACTTATGAGCCTGTTGACGCGGTTTTTGAGAATCTGAACCTCAAATCTTTACTAGATCAATTTTGTTGTGATGAAGCGACATTGGTTCATTCAATAATTTGCAACTATTACGAGGGTTTTGACGGCAATGAATATTTTAGGGAACTTCTTCTCCATTTGATCAATGATAGGAAATTTGATCAAACTAAATCTATCTTGGACGCAATGAAGGGCATCGATGAGGATGAGGACTTAATTTCCTCAGTCCATAAGATCTTCAATGCAAATTTGTTAAAAAAAAAATTTGTGCTTCCTAATCCACCTCTGTCAGCAGCATTTTCTTTTAGTTTACAAGTTGATGGGACCATCAAACTTCCTGATGACCGCGTATTGGTTCCAAGGGATTCTACTATTAGGTCTTTGAAGACCGAAATTGTTCATGAAACTTATGATTTCAGAAGGTTAACTGATGTTGGTCAATTAAAGTTCATACTTCCAGATGATTCCTTCGATATTGAGAATCATGATGATGATGCAAAAATAAATTCATATTTTGAGCCCGGTGCATCTATGTTAGTTGAAGTTTCAGATTCGACGCGCCAATTAAGAGTTCAAAAAGATGAAGAATGGAAGGTCGTTTGCCGCTGCGGGGCAATAGATGATGATGGGGAGTATATGTTTGAGTGCGATACGTGTGGTGTGTGGAGTCACCGGGATTGTAATCCTGAATATGTCAATGAGAGTTTTGTATGCTTTTCTTGTAGAAAAGATTGA 1374 0.3937 MVLKEKLTAHREWISDYWDPPIQQPKQVREQGKFLIRYQELHDDNKVLIEEDIDDKHIRPSPPFTDAKFKLLDKVDALVLDGWRIGGWSNHLRSIKTFHFIVKASESSLLQIDSNDNLLHAKVHLNGMGHLLWVKASAQFSGTSIMNCWDDICSNLCVREVSLLDTSTRNDIPLRVLFGLSKFGGFRTWFEQFGYHVSQGCFGTTIATYEPVDAVFENLNLKSLLDQFCCDEATLVHSIICNYYEGFDGNEYFRELLLHLINDRKFDQTKSILDAMKGIDEDEDLISSVHKIFNANLLKKKFVLPNPPLSAAFSFSLQVDGTIKLPDDRVLVPRDSTIRSLKTEIVHETYDFRRLTDVGQLKFILPDDSFDIENHDDDAKINSYFEPGASMLVEVSDSTRQLRVQKDEEWKVVCRCGAIDDDGEYMFECDTCGVWSHRDCNPEYVNESFVCFSCRKD* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0878 457 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 84 251 - -
Lja5g0878 457 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 324 456 - -
Lja5g0878 457 SUPERFAMILY FYVE/PHD zinc finger 405 456 IPR011011 -
Lja5g0878 457 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 397 457 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0878 Lja-Chr5 8464088 8467019 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0878 411 454 PHD Transcription Factor Family AT5G22260 43.750 4.72e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0878 - - jre:108987963 95.9005