Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0874 ATGGCCAAGGACGTTGAGGTTGCTGAGCGTGGCTCTTTCTCTAGCAAGGACTACCATGACCCTCCTCCTGCACCTCTCATTGATGCAGAGGAGCTCACAAAGTGGTCCTTCTACAGGGCAGTCATTGCTGAGTTCATTGCCACTTTGCTTTTCCTTTACATTACTGTGCTCACTGTGATTGGCTACAAGGTTCAGAGTGATGTCAAAAATGGTGGAGATGATTGTGGAGGTGTTGGCATTCTTGGTATTGCTTGGGCCTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCTGGGATCTCAGGGGGTCACATTAACCCAGCAGTGACATTTGGGCTGTTCTTGGCTCGTAAGGTGTCTTTGATCCGAGCCATCTTGTACATGGTGGCTCAGTGCTTGGGAGCTATTTGTGGAGTTGGGTTGGTTAAGGCTTTCCAGAAGTCTCACTACAACAAATATGGTGGTGGAGCTAACTCTCTTAATGATGGGTACAGCACAGGTACTGGATTAGGTGCTGAGATCATTGGTACCTTTGTTTTGGTATACACAGTGTTCTCTGCTACTGATCCCAAAAGAAGTGCCAGAGATTCCCATGTGCCGGTTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCATGGTTCACTTGGCCACCATCCCAGTCACTGGTACTGGCATTAACCCTGCTAGGAGTTTTGGAGCTGCTGTTATCTTCAACCAATCTAAACCCTGGGATGACCATTGGATCTTCTGGGTAGGACCATTCATTGGGGCAGCCATTGCAGCATTCTACCACCAGTTCATCTTGAGAGCAGGTGCAGTGAAGGCTCTTGGATCATTCAGGAGTAACCCCACTGTTTAA 864 0.4826 MAKDVEVAERGSFSSKDYHDPPPAPLIDAEELTKWSFYRAVIAEFIATLLFLYITVLTVIGYKVQSDVKNGGDDCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAILYMVAQCLGAICGVGLVKAFQKSHYNKYGGGANSLNDGYSTGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGAAVIFNQSKPWDDHWIFWVGPFIGAAIAAFYHQFILRAGAVKALGSFRSNPTV* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0874 287 PANTHER AQUAPORIN PIP2-4-RELATED 1 284 - -
Lja5g0874 287 SUPERFAMILY Aquaporin-like 31 271 IPR023271 -
Lja5g0874 287 ProSitePatterns MIP family signature. 105 113 IPR022357 -
Lja5g0874 287 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja5g0874 287 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja5g0874 287 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja5g0874 287 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja5g0874 287 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja5g0874 287 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja5g0874 287 Gene3D Glycerol uptake facilitator protein. 24 287 IPR023271 -
Lja5g0874 287 TIGRFAM MIP: MIP family channel proteins 43 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja5g0874 287 CDD MIP 39 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja5g0874 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 284 IPR034294 -
Lja5g0874 287 Pfam Major intrinsic protein 31 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0874 Lja-Chr5 8410595 8413578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0874 1 287 Major Intrinsic Protein MIP AT2G37170 86.063 0.0 509
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0874 K09872 - gmx:100817292 536.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0874 5 8410595 8413578 Lja1g0860 1 8479992 8481585 ECH
Lja1g0860 1 8479992 8481585 Lja5g0874 5 8410595 8413578 ECH
Lja5g0874 5 8410595 8413578 Lja5g0874 5 8410595 8413578 ECH