Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0862 ATGGGGTTTTGTTATCATGTTTTGTTTTTGTTGTCCATTTGTGTGGGAGTTTCTCTAGCCACACCAATAGAAGATCAAAGGAGAGATAGGATTACCTATCTTCCAGGGCAGCCAAAGAATGTTGAATTTGCTCAGTACTCTGGCTATGTTACTGTCAATGAGCAGAATGGGAGGGCATTGTTTTACTGGTTGGTTGAGGCGCCGGCGAACCGTGGACCTAAGTCAAGGCCACTTGTGTTGTGGCTTAATGGTGGCCCTGGATGCTCCTCCATTGCTTATGGTGCATCGGAAGAAATTGGCCCTTTTCATATTAAGCCTGATGGGAAGACACTTTACTCGAATCCTTATGCTTGGAACAATTTGGCAAATATACTATTTCTTGACTCTCCTGCTGGGGTTGGTTTTTCATATGCAAATAAAACAACAGATCTGTATACATTTGGTGACAAGAAAACAGCTGAAGATGCATATATTTTTCTTGTCAATTGGTTTGAAAGATTTCCTCAATATAAGCATAGAGAATTCTACATTGCTGGAGAAAGTTATGCAGGTCACTATGTTCCTCAGTTGGCTCAACTTGTTTATCGGAGAAATAAGGGAATAAATAATCCGGATATAAATTTTAAGGGATTTATGGTTGGAAATGCTGTTACTGATGATTATCATGATTATGTTGGCACATTTGAGTACTGGTGGACTCATGGTTTAATTTCAGATTCCACATATAGGATGCTGAGAATTGCTTGTGACTTTGGCTCCTCACAACATCCATCAGTGCAATGCATGCAGGCTCTCAGAGTAGCAGTTGTGGAGCAGGGAAATATTGATCCATACAGCATTTATACACCGCCTTGTAACGATACCGCATCACTCAGAAGCGGCTTGAGGGGTCGCTATCCATGGATGTCTCGAGCTTATGATCCCTGTACTGAAAGGCATTCTTCTGTGTATTTCAATCTTCCAGAAGTTCAGAAGGCACTTCATGCCAATGTTACTGGGGTTTCTTATGAATGGAAGACTTGCAGTGATATTGTTGGAAACTATTGGACTGATTCTCCACTATCCATGCTTCCTATATACCGGGAACTTATTAATGCTAGCCTCCGTATATGGGTTTACAGTGGAGATACTGATGCTGTGGTTCCTTTGACTGCCACTCGATATTCCATTGATGCCTTGAAACTACCAACCATCATCAACTGGTACCCTTGGAATGATAATGGCAAGGTTGGTGGGTGGAGTCAAGTTTATAAAGGGCTCACACTGGTTACAGTAAGAGGAGCTGGACATGAGGTTCCACTCCACAGGCCTCGCCAGGCATTTATTCTTTTTAGGTCCTTCTTGGAGAACAAGGCCATGCCATCTTCAAGTTAG 1374 0.4229 MGFCYHVLFLLSICVGVSLATPIEDQRRDRITYLPGQPKNVEFAQYSGYVTVNEQNGRALFYWLVEAPANRGPKSRPLVLWLNGGPGCSSIAYGASEEIGPFHIKPDGKTLYSNPYAWNNLANILFLDSPAGVGFSYANKTTDLYTFGDKKTAEDAYIFLVNWFERFPQYKHREFYIAGESYAGHYVPQLAQLVYRRNKGINNPDINFKGFMVGNAVTDDYHDYVGTFEYWWTHGLISDSTYRMLRIACDFGSSQHPSVQCMQALRVAVVEQGNIDPYSIYTPPCNDTASLRSGLRGRYPWMSRAYDPCTERHSSVYFNLPEVQKALHANVTGVSYEWKTCSDIVGNYWTDSPLSMLPIYRELINASLRIWVYSGDTDAVVPLTATRYSIDALKLPTIINWYPWNDNGKVGGWSQVYKGLTLVTVRGAGHEVPLHRPRQAFILFRSFLENKAMPSSS* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0862 457 Pfam Serine carboxypeptidase 35 450 IPR001563 GO:0004185|GO:0006508
Lja5g0862 457 Gene3D alpha/beta hydrolase 26 287 IPR029058 -
Lja5g0862 457 PRINTS Carboxypeptidase C serine protease (S10) family signature 114 126 IPR001563 GO:0004185|GO:0006508
Lja5g0862 457 PRINTS Carboxypeptidase C serine protease (S10) family signature 163 188 IPR001563 GO:0004185|GO:0006508
Lja5g0862 457 PRINTS Carboxypeptidase C serine protease (S10) family signature 127 137 IPR001563 GO:0004185|GO:0006508
Lja5g0862 457 PRINTS Carboxypeptidase C serine protease (S10) family signature 420 433 IPR001563 GO:0004185|GO:0006508
Lja5g0862 457 PANTHER CARBOXYPEPTIDASE 9 455 - -
Lja5g0862 457 Gene3D - 309 345 - -
Lja5g0862 457 Gene3D - 356 449 - -
Lja5g0862 457 ProSitePatterns Serine carboxypeptidases, serine active site. 177 184 IPR018202 GO:0004185
Lja5g0862 457 SUPERFAMILY alpha/beta-Hydrolases 27 453 IPR029058 -
Lja5g0862 457 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 9 455 IPR001563 GO:0004185|GO:0006508
Lja5g0862 457 ProSitePatterns Serine carboxypeptidases, histidine active site. 420 437 IPR033124 GO:0004185
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0862 Lja-Chr5 8250141 8253769 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0862 319 453 Calmodulin-binding Proteins AT2G22960 27.941 9.48e-13 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0862 K16297 - gmx:100805722 863.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0862 5 8250141 8253769 Lja5g0862 5 8250141 8253769 ECH