Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0858 ATGCCGCCTGAACCATTGCCTTGGGATCGAAAGGACTTCTTCAAGGAGAGGAAGCACGAGAGGTCCGAGTCGGTTGGGTCCGTCGCGAGATGGAGAGATTCTTCTCATCACCGGGACTTCCACCGCTGGGGATCGGCCGAGTTTCGCAGACCGCCTGGTCATGGTAAGCAGGGTGGTTGGCACCTGTTTTCCGAGGAATCTGGCCATGGGTACGCGGGTTCTCGGTCCGGCGACAAGATGGTGGAGGAAGATAGTCGGCCATCGATCTCACGTGGTGATGGAAAATATGGCAGGAGCGGTAGCAGGGAAAATAGAGGTTCCTCTGGGCCGAGAGATTGGAGAGGACACTCATGGGAAAACTCTAATGGCTCTCAGAATTTTTCCAGGAGGCCACCAGATGTGAATAATGACCAGAGGTCAGTTGACGATACCCTAGCGCATTCCTCTCATCCACATTCTGATTTTGCGAATAACTCTTGGGATCAGCATCACTTGAAAGACCAGAATGATAAGATGGGTGGTTTCAATGGGACGGGAACAGGCCCCAGATGTGATAGGGAGAATTCTCTCGGTGCAGCTGACTGGAAGCCACTTAAATGGACCCGTTCTGGAAGCTTGTCTTCTCGAGCCTCGGGTTTTAGCCACACAAGTAGCTCAAGGAGCATGGGAGGGGCGGATTCCTATGAAGTGAAGGCTGAATTGCAACCGAAAAATGCAACTGCTAGTAAGTCGCATTCAGGGGAAGCTGCTACTGCACGTGTGACATCTTCTGCGCCATCTGAAGATACAACTTCTAGAAAAAAGCCTAGGCTAGGTTGGGGTGAAGGACTTGCAAAGTATGAGAAGAAAAAAGTTGAGGGGCCTGAATTAAGTGTTAACAAAGATGGCCCTGTCTCGTCTACTAGTAATATGGAACCTTGTAATGTCTTCAGTCCCAACTTAGTAGATAAAAGCCCAAAACTTACTGGGTTTTCAGACTGTGCATCTCCTGCAACGCCATCTTCTGTTGCCTGCAGTTCCTCACCAGGTGTGGATGATAAATTATTCAGCAAGAGTGCAAACGTGGACAGTGATTTTAGTAATTTGACTGGTTCGCCTGCTCCTGGGTCCCAGAATCATCTGCAGAAGTTCTCTTTTAACTTACATAACTTGGATATTTATTCCTTGAATAATTTGGGGTCTTCAATTGTTGATTTGGTACAATCTGATGATCCCAGTTCTGTGGATTCTGGTTTAGGGAGGTCCAGTGCAATTAATAAGTTGCTGATATGGAAAGCTGACATTTCGAAGGTATTGGAGATGACTGAAACTGAAATTGATTCGCTTGAAAATGAACTCAAGTCTCTTAAATCTGAACCTGGTGATAAATGTCCACCAGCACCGGGCTCACAGGTGGTCGGTAACAATGAAATTTTTTGTGAAGATCTTGCTGGAGTCAATAAGGTCACTCGGCCAGTACCCTTGAAAATTGTTTCTTCTGATGAGCCCGATGTAGAGAAGATGCCTCAGTCAAATAATTTACATAGTATTCATGAAAATGCCAATGAAGAGGGTATTGATAGTCCTGGAACAGCAACTTCTAAATTTGTTGAGCCTCTGCCTTTGATTAAAGCAGTTTCGTCATGTGAAGCCAGGGGATATGATAACTTCTCTGCAGATTTGAATGCTCGTCAGTCTGCAGCCGTAAAATCCTTAGTCCCTTGTACTACTAGGAGAAATGCTAGTGTATCTGCTTGTGGTGATAGCAATACTTCTATGGAGGTGAAGGTTAGCTTGGATGCTTCCTCTGGAGCAAGCTTAAGTTATAGCTCGGAGGATATTTACAATACAATTATTTCTTCAAATAAAGAAATTGCTGACAGAGCACATGATGCATTTGCTAAGTTATTGCCCAAAGAATGTTGTAAGATTGATAATGTGGGGGCTAACAACGGCTCATGCACTGGTGGATTAATTGTGGAAAAAATTGCTGAGAAAAAGCAGTTTGCAAGATTTAAGGAGAGAGTTATCGCACTTAAGTTCAAAGCCCTGCATCATGTGTGGAAAGAAGATATGCGCTTACTGTCTATGAAGAAATGCCGCCAAAAATCTCACAAGAAAAATGAACTTAGTGTGCGAACTACCTATAATGGCAATCAGAAGAATCGGTCCTCCATCCGGTCACGTTTTACTTCCCCTGCAGGAAATCATCTAAGCATGGTCCCAACATCAGAGATAATTAATTTTACAAGCACGCTGCTTTCAGAATCCCAAGTCAAAGCTCAGAGAAACGCCCTGAAGATGCCAGCATTGATTTTGGATGAAAAGGAGAAGCTGATTTCAAAGTTCATATCTAGTAATGGGCTGGTTGAAGATCCGTTGGCTGTGGAGAAAGAAAAGGCTATGATCAATCCATGGACATCTGAGGAGAGAGAAATTTTCTTGGAGAAATTTGCTGCCTTGGGAAAAGATTTTCGGAAAATCGCTTCTTTCCTTGACCACAAGACAACTGCTGATTGTGTTGAATTCTACTACAAGAACCATAAATCTGATTGTTTTGTGAAGCTTAAGAAGGAAGGTCTTTGTAAGCTAGGAAAGTCATTTTCAGCTAAAACAAGTTTGGTGGCATCAGGTAAAAAATGGAATCGTGAAGTTAATGCTGCATCGCTTGAGATTTTGAGTGCAGCTTCAGTGATGGCAGACGGTATGTCAGGCAATAAAAAAATGCGTTCAAGAAGTTTCCTTTTGGGGGGATATGGCAATGTAAAAAAATCTAAGGGTGAAGACAGCTTCATAGATAGATCAAGCAGTTTTGACATTCATGGGGATGAAAGAGAGACTGCTGCTGCAGCTGATGTATTGGCTGGTATATGTGGCTCTCTTTCATCTGAGGCCATGAGTTCCTGCATCACAAGTTCAGTTGATCCTGTAGATGGCAACACGGATAGGAAGTTCTTGAAAGCTAATCCTTTGTGCAGAAAACCCTTGACACCTGATGTTACTCAGAATGTTGAGGACGAGACTTGTTCAGATCAGAGCTCGGATGAAATGGATCTTTCCGATTGGACAGATGATGAGAAGGCAGCTTTACTTCAGGCTGTATCATCTTTTGGTAAGGATTTTGCAAAGATAGCACGGTGTGTGGGAACGAAATCCCAAGAACAGTGCAAAGTTTTCTTCACCAAGGCTCGGAAATGCCTTAGGTTAGACCTCATGCACCCTATACCTGGAAATGGCAGGTCTTTAGGGAATGATGATGCAAATGGTGGAGGTAGTGACACAGATGATGCGTGTGTTGTTGAGACAGGCTCAGCAGTAGGCACTGATAAGTCTGGCACTAAAACAGATGAGGATCTGCCTTCTATGAATGCATTCCATGATGAATCCAACCCTGTCGAACCTAGGAACCTGTCTGCTGAATTGAATGAATCAAAGGAAAATAATTTGACAGCTGTAGATCTTGAAGACATAAATTTGATTTCTGATGCTTGTGCAATTAAGGTGGAATCCAAACTGGGCTCTGATGATGATAGTGAAGTTGTCTTGGCAAGTCCTGATAAGTCTGCCTCAGTCAGTGAGCGAGCAGCTATGATTATGTCTGGTAGCATAGAAGGCGGAAAAGAAAGAGCAAATAAATTGGGAGGTGCAGAATTGATTTCTGCTCCAGAGGTTGTTGAACTGCGCGAGTGTAATTCTGTACCCGCAGATAGACTAACCTCTGAGGTTTCTTTGGGGGGTCTTGGAAATAAATTGAAGACACAGAGAGTGTTGTCACCCCATTGTTTTGATGACAGAGATGATAAACATGAAGCTAATACAGGTGTGGTTGAATTGAAAAGCTCTGTGCAAGATTCAAGCACTTCACTAAATGTCTCACTCTCATCTGTGGGCAGTTCTTATTCAGGATTGTGTTTCGATAGTGAAAATAAGCATGTCTTTGTTGGAAAGCCTCCTATCTCAGCATTATCTTTGAAGGAATTTCATCCAACTGCAAATTCATTGTTGCAAAATGCTGCTGCTGATGTTCAATCTGAGAAAGCAGCTAGTCAAGTTCAACTGTCCTCTACTTCTGACATTCAGGGAATTAGAGATATGCATTGTCATAACCCCATTAGCAATGGTGATCATCAGCTTCCTCTTCCTGGGAACCATCTTATGGCTAGTATCCTGCAGGGCTATCCCTTACAAGTGCCCATTAAGAAGGAAGTGAACGTGAATATGAATTGCAGCGGTTCAGCAACTGAGTTGCCTCTTCTGTCCCAAAAGATTGAACAGGCTGATGATCATTTCAAAACAACATTACGGCGTCCTTCAGATTCAGAAAAGGCATCCAGAAATGGTGATGTGAAGCTTTTTGGAAAAATACTAACCAATCCTTCATCCACTCAGAAGCCAAATTTGACTACCAAGGGAATTGAAGAAAACGGTACCCATCATCCTAAGTTAAGCAACAAGTCTTCTAGTCTGAAATTTTCTGGCCACCATAACACTGATGGACATTTGAAAATTTTGAAGTTTGACCGAAATGACCATAATGATTATCTTGGCCTTGAAAACGTTCCCATGAGGAGTTATGGTTTTTGGGATGGGAACAGAATACAGACCGGTCTCTCAGCATTGCCCGATTCGACCATCTTGCTAGCAAAATATCCTGCTGCTTTTAGTAATTATCCTGCATCTTCTGCCATGTTGGAGCACCAGTCATTGCAGACATTTGCTAAGAATAATGAACGGCACCTGAATGGAGCATCTGCTTTTACAACTAGAGACATCAATGGCAGCAATGCTGTGATTGATTATCAAATGTTCAGAAGTAGAGATGTCAAGCACTGCCAAGATGTATTCACTGATATGCAGAGAAGAAATGGTTTTGAAACAATCTCTAGTTTACAGCAGCAGGGGAGGGGAGTGATTGGAATGAATGGTGTTGGAAGACCTGGGATTCTTGTTGGAGGATCTTGCAGTGGTGTCTCGGATCCTGTGGCAGCAATCAAAATGCACTATACCAATTCTGACAAGTATGGTGGTCAGACCGGGAGCATCACAAGAGAGGATGAATCTTGGGGAGGGAAAGGAGACTTAGGAAGGTAG 5070 0.4343 MPPEPLPWDRKDFFKERKHERSESVGSVARWRDSSHHRDFHRWGSAEFRRPPGHGKQGGWHLFSEESGHGYAGSRSGDKMVEEDSRPSISRGDGKYGRSGSRENRGSSGPRDWRGHSWENSNGSQNFSRRPPDVNNDQRSVDDTLAHSSHPHSDFANNSWDQHHLKDQNDKMGGFNGTGTGPRCDRENSLGAADWKPLKWTRSGSLSSRASGFSHTSSSRSMGGADSYEVKAELQPKNATASKSHSGEAATARVTSSAPSEDTTSRKKPRLGWGEGLAKYEKKKVEGPELSVNKDGPVSSTSNMEPCNVFSPNLVDKSPKLTGFSDCASPATPSSVACSSSPGVDDKLFSKSANVDSDFSNLTGSPAPGSQNHLQKFSFNLHNLDIYSLNNLGSSIVDLVQSDDPSSVDSGLGRSSAINKLLIWKADISKVLEMTETEIDSLENELKSLKSEPGDKCPPAPGSQVVGNNEIFCEDLAGVNKVTRPVPLKIVSSDEPDVEKMPQSNNLHSIHENANEEGIDSPGTATSKFVEPLPLIKAVSSCEARGYDNFSADLNARQSAAVKSLVPCTTRRNASVSACGDSNTSMEVKVSLDASSGASLSYSSEDIYNTIISSNKEIADRAHDAFAKLLPKECCKIDNVGANNGSCTGGLIVEKIAEKKQFARFKERVIALKFKALHHVWKEDMRLLSMKKCRQKSHKKNELSVRTTYNGNQKNRSSIRSRFTSPAGNHLSMVPTSEIINFTSTLLSESQVKAQRNALKMPALILDEKEKLISKFISSNGLVEDPLAVEKEKAMINPWTSEEREIFLEKFAALGKDFRKIASFLDHKTTADCVEFYYKNHKSDCFVKLKKEGLCKLGKSFSAKTSLVASGKKWNREVNAASLEILSAASVMADGMSGNKKMRSRSFLLGGYGNVKKSKGEDSFIDRSSSFDIHGDERETAAAADVLAGICGSLSSEAMSSCITSSVDPVDGNTDRKFLKANPLCRKPLTPDVTQNVEDETCSDQSSDEMDLSDWTDDEKAALLQAVSSFGKDFAKIARCVGTKSQEQCKVFFTKARKCLRLDLMHPIPGNGRSLGNDDANGGGSDTDDACVVETGSAVGTDKSGTKTDEDLPSMNAFHDESNPVEPRNLSAELNESKENNLTAVDLEDINLISDACAIKVESKLGSDDDSEVVLASPDKSASVSERAAMIMSGSIEGGKERANKLGGAELISAPEVVELRECNSVPADRLTSEVSLGGLGNKLKTQRVLSPHCFDDRDDKHEANTGVVELKSSVQDSSTSLNVSLSSVGSSYSGLCFDSENKHVFVGKPPISALSLKEFHPTANSLLQNAAADVQSEKAASQVQLSSTSDIQGIRDMHCHNPISNGDHQLPLPGNHLMASILQGYPLQVPIKKEVNVNMNCSGSATELPLLSQKIEQADDHFKTTLRRPSDSEKASRNGDVKLFGKILTNPSSTQKPNLTTKGIEENGTHHPKLSNKSSSLKFSGHHNTDGHLKILKFDRNDHNDYLGLENVPMRSYGFWDGNRIQTGLSALPDSTILLAKYPAAFSNYPASSAMLEHQSLQTFAKNNERHLNGASAFTTRDINGSNAVIDYQMFRSRDVKHCQDVFTDMQRRNGFETISSLQQQGRGVIGMNGVGRPGILVGGSCSGVSDPVAAIKMHYTNSDKYGGQTGSITREDESWGGKGDLGR* 1690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0858 1689 ProSiteProfiles SANT domain profile. 794 845 IPR017884 -
Lja5g0858 1689 SUPERFAMILY Homeodomain-like 1010 1061 IPR009057 -
Lja5g0858 1689 MobiDBLite consensus disorder prediction 201 224 - -
Lja5g0858 1689 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 1662 - -
Lja5g0858 1689 MobiDBLite consensus disorder prediction 76 112 - -
Lja5g0858 1689 MobiDBLite consensus disorder prediction 237 262 - -
Lja5g0858 1689 Coils Coil 425 452 - -
Lja5g0858 1689 MobiDBLite consensus disorder prediction 8 49 - -
Lja5g0858 1689 MobiDBLite consensus disorder prediction 1666 1689 - -
Lja5g0858 1689 MobiDBLite consensus disorder prediction 1070 1127 - -
Lja5g0858 1689 CDD SANT 1015 1055 IPR001005 -
Lja5g0858 1689 SMART sant 1011 1059 IPR001005 -
Lja5g0858 1689 SMART sant 795 843 IPR001005 -
Lja5g0858 1689 MobiDBLite consensus disorder prediction 1 275 - -
Lja5g0858 1689 MobiDBLite consensus disorder prediction 114 142 - -
Lja5g0858 1689 ProSiteProfiles SANT domain profile. 1013 1061 IPR017884 -
Lja5g0858 1689 SUPERFAMILY Homeodomain-like 782 842 IPR009057 -
Lja5g0858 1689 Gene3D - 775 846 - -
Lja5g0858 1689 MobiDBLite consensus disorder prediction 1425 1441 - -
Lja5g0858 1689 MobiDBLite consensus disorder prediction 1448 1466 - -
Lja5g0858 1689 MobiDBLite consensus disorder prediction 1425 1482 - -
Lja5g0858 1689 MobiDBLite consensus disorder prediction 285 304 - -
Lja5g0858 1689 Pfam Myb-like DNA-binding domain 798 839 IPR001005 -
Lja5g0858 1689 Pfam Myb-like DNA-binding domain 1014 1055 IPR001005 -
Lja5g0858 1689 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 1662 - -
Lja5g0858 1689 Gene3D - 979 1066 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0858 Lja-Chr5 8195455 8205294 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja5g0858 Myb_DNA-binding 1.5e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0858 - - lja:Lj5g3v1839400.2 2752.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0858 5 8195455 8205294 Lja5g0858 5 8195455 8205294 ECH