Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0848 ATGGGGAGGAAAGGAAGTTGGTTTTCTTCTGTGAAGAAAGTTTTCATTTCTGATTCCAGAAAAGATCAGAAACATCATCATAAATCAAAGTTAGCATGTTTTGGGCACCACCACCAATCTGAGGACCCTGAACGGGCTTCTGAAGGAGCAGTAGTTGCTGTTGTTTGTCCCTCTCTTCCACCTAGAAAAGATGTGAAACCAAAACCTGATGAGGCAGAGAATGAACAGAGCAAGCAAGCTTTCTCCTTGGTTTTGGCCACTGCGGTTGCCGCGGGGGCTGCAGTTGCTGCTGCTGCAGAGGTTGCTCGTCTCAATAACGCGTCTCGTTACCCTGGAAAAACCAATGAAGAAATAGCAGCTATCAAGATTCAGACTGCATTTCGTGGATATCGGGCAAGAAGATCATTGCGTGCATTGAGAGGTTTGTCCAGGTTGAAAACATTAGTGCAAGGGCAATCAGTTCAACGGCAAGCAGCTACTACCTTGCAATGCATGCAAACTCTTTCAAGAGTTCAGACTCAGGTTAATGCACGGAAGATCAGAATGTCCGAGGAGAACCAATCTTTTCAGCGGCAACTTCAGCAGAAACGTGATAAGGAACTTGACAAGTCTCAACCTGCTCGGCCTGTAGAAAAATGGGATGATAGCTCAAAATCAAAGGAGCAAATCAAAGAAAAATTGTTGAACAGGCAAGTGGCTGCTATGAGAAGAGAAAAGGCTTTGGCCTATGCATCAACACATCAGCAAACATGGAGGAACTCTTCAAAATCCACAAATGCCACATTCATGGATCCAAACAATCCCCACTGGGGCTGGAATTGGCTTGAGAGATGGATGGCTGCAAGGCCATGGGAGGGCCAAACCACCATGAACCAAAACAATCATGCATCTGGAAAGAGTGCTGCAAGCCACACCATGTCAGTTGGGGAAATCACCAAATTGTACTCTCTCAGAGATCAGAATCAAGAACCTAAGAACTCACCTTCACCTGCTCAAAAAGCAACTCGGCCTCGCGGTCACAATTCCCCTTTAGCTTCAAAGCCCCCATCTAATGGGAAAACAAAGGCATCATCAAGCCCCAAGGTTAATTCATGGGGTGGCAATGGTGACTCAGGAAACATATTCAACAAGAACTCGGAGAGCGTCGACCGGAGGCATAGCATTGCAGGATCTCCAGAGAGAGATGATGAGAGCCTTGCAAGCTCACCAGCACCTCCAACTCACACTACTACAGCAACATCCACAAAGGTTGTTGCAAAGGCCAGGTCCTCCAAAGTGCAACTGCAAAGTCCATCTGGGGTGCTAAGAAACAATGGAACAACAACAACACCTGAAAAGGGAGGTTCTGTTTCTGCAAAGAAGAGGCTTTCTTTCCCAGATTCTCCATCCAATGCAAGAAGGCTTTCTGTTTCAACTAAGGGGGTTTCCAATAAGAATGTTGCTGCCAACACCATCCCTGAATAG 1464 0.4638 MGRKGSWFSSVKKVFISDSRKDQKHHHKSKLACFGHHHQSEDPERASEGAVVAVVCPSLPPRKDVKPKPDEAENEQSKQAFSLVLATAVAAGAAVAAAAEVARLNNASRYPGKTNEEIAAIKIQTAFRGYRARRSLRALRGLSRLKTLVQGQSVQRQAATTLQCMQTLSRVQTQVNARKIRMSEENQSFQRQLQQKRDKELDKSQPARPVEKWDDSSKSKEQIKEKLLNRQVAAMRREKALAYASTHQQTWRNSSKSTNATFMDPNNPHWGWNWLERWMAARPWEGQTTMNQNNHASGKSAASHTMSVGEITKLYSLRDQNQEPKNSPSPAQKATRPRGHNSPLASKPPSNGKTKASSSPKVNSWGGNGDSGNIFNKNSESVDRRHSIAGSPERDDESLASSPAPPTHTTTATSTKVVAKARSSKVQLQSPSGVLRNNGTTTTPEKGGSVSAKKRLSFPDSPSNARRLSVSTKGVSNKNVAANTIPE* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0848 487 PANTHER IQ-DOMAIN 5-RELATED 1 482 - -
Lja5g0848 487 MobiDBLite consensus disorder prediction 379 393 - -
Lja5g0848 487 MobiDBLite consensus disorder prediction 183 222 - -
Lja5g0848 487 ProSiteProfiles IQ motif profile. 116 144 IPR000048 GO:0005515
Lja5g0848 487 MobiDBLite consensus disorder prediction 402 448 - -
Lja5g0848 487 Coils Coil 179 199 - -
Lja5g0848 487 MobiDBLite consensus disorder prediction 18 48 - -
Lja5g0848 487 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 482 - -
Lja5g0848 487 MobiDBLite consensus disorder prediction 191 222 - -
Lja5g0848 487 Pfam IQ calmodulin-binding motif 119 137 IPR000048 GO:0005515
Lja5g0848 487 MobiDBLite consensus disorder prediction 456 487 - -
Lja5g0848 487 SMART iq_5 115 137 IPR000048 GO:0005515
Lja5g0848 487 MobiDBLite consensus disorder prediction 344 378 - -
Lja5g0848 487 MobiDBLite consensus disorder prediction 317 487 - -
Lja5g0848 487 MobiDBLite consensus disorder prediction 244 265 - -
Lja5g0848 487 MobiDBLite consensus disorder prediction 317 336 - -
Lja5g0848 487 Gene3D - 98 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0848 Lja-Chr5 8071938 8075072 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0848 1 482 IQD Protein Family AT5G03040 42.376 1.15e-97 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0848 - - gmx:100807725 551.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0848 5 8071938 8075072 Lja5g0848 5 8071938 8075072 ECH