Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0845 ATGGCACACAAAGTGAATTCCCCACCAATCCCAATCCATGTTCCCACCATGTTCTCTAACTCTCCCCCATCTTCATCTTCTTCACCTCCTACACAATCCCCTATACCTTTCCCTTCACCCTCTCAGCGCTCTCCCTCTGCCACCGCCGCCGCCGCTCCTCCTCCTCCAACATCTCCTCAGCCAGTGGTGGTTAGTCCCTGTGCAGCCTGCAAGATTCTCCGCCGGAGGTGTGTGGAGAAGTGTGTCCTGGCTCCCTATTTCCCTCCCACTGATCCACTCAAGTTCACCATTGCTCATAGAGTCTTTGGAGCTAGCAACATCATCAAGTTCTTGCAGGAGCTACCAGAATCCCAGAGAGCAGATGCTGTGAGTAGCATGGTGTATGAAGCAAATGCTAGGATCAGAGACCCAGTTTATGGCTGTGCAGGTGCAATATGCCAACTTCAAAAGCAAGTTAGTGAGCTGCAAGCACAACTAGCCAAAGCTCAAGCTGAAATGGTTAACATGCAGTGCCAACATGCTAATCTACTAGCACTAATTTGCATGGAAATGACTCAAACTCAATCACCAGAACAACAACAGAACATAATTCAGCCACAAACTCATGTTGATATGAGCTGCTTCTTAGAGGACAACAATTTTGGCTCTGCTTGGGAACCTCTTTGGACATGA 672 0.4866 MAHKVNSPPIPIHVPTMFSNSPPSSSSSPPTQSPIPFPSPSQRSPSATAAAAPPPPTSPQPVVVSPCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVSELQAQLAKAQAEMVNMQCQHANLLALICMEMTQTQSPEQQQNIIQPQTHVDMSCFLEDNNFGSAWEPLWT* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0845 223 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1-LIKE 52 215 - -
Lja5g0845 223 MobiDBLite consensus disorder prediction 27 41 - -
Lja5g0845 223 MobiDBLite consensus disorder prediction 1 63 - -
Lja5g0845 223 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 52 215 - -
Lja5g0845 223 Coils Coil 145 179 - -
Lja5g0845 223 ProSiteProfiles LOB domain profile. 65 166 IPR004883 -
Lja5g0845 223 Pfam Lateral organ boundaries (LOB) domain 66 163 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0845 Lja-Chr5 8042490 8044366 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0845 62 223 AS2 family AT1G07900 72.892 1.08e-78 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Lja5g0845 LOB 2.8e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0845 - - gmx:100806667 306.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0845 5 8042490 8044366 Lja5g0845 5 8042490 8044366 ECH