Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0837 ATGTCAGACAACTCAGGGTGCTCTGTGTACATAGGCAATCTGGATGAGAGGGTCACAGACAGGGTCTTGTATGATATATTAATTCAAGCAGGACGAGTGGTAGACCTGCACATTCCTAAAGATAAGGAATCTGAGAAACCAAAAGGTTTTGCTTTTGCAGAATATGAAACTGAGGAGGTTGCAGACTATGCTGTCAGGCTTTTCTCAGGCCTTGTAACACTGTACAACAGAACACTGAAGTTTGCGATATCTGGGAAAGATAAAACCACTCCTAATGGTTCTACAGCAAATACACCGTCATCAAATTCTTCACAACGACCAAGGCTTAACCCAGTGCCTATATATAACTCAGAAAATTTTCAACACTCTGCTAGGCTATCAACTCCTGAAAGATTTTCAGATTATGCAGTAAACCATTCACAAGTTCCTCCTCATCGTTTAAGTGGCCAATCTAGTGGGTATGGAACTCACTATGGTAGCAACAATTATGAGTACAGTCGTAGAGCTTTGGGGGCAACATTGGATAGCATTAGCCGTTCTAGTGCACGCAGCTCTGATAGAACTAGCCCAATCACTTACCCATCTTACTAA 591 0.4213 MSDNSGCSVYIGNLDERVTDRVLYDILIQAGRVVDLHIPKDKESEKPKGFAFAEYETEEVADYAVRLFSGLVTLYNRTLKFAISGKDKTTPNGSTANTPSSNSSQRPRLNPVPIYNSENFQHSARLSTPERFSDYAVNHSQVPPHRLSGQSSGYGTHYGSNNYEYSRRALGATLDSISRSSARSSDRTSPITYPSY* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0837 196 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 86 IPR000504 GO:0003723
Lja5g0837 196 MobiDBLite consensus disorder prediction 85 115 - -
Lja5g0837 196 Gene3D - 1 95 IPR012677 -
Lja5g0837 196 PANTHER RNA BINDING MOTIF RBM PROTEIN -RELATED 1 196 - -
Lja5g0837 196 PANTHER OS01G0876500 PROTEIN 1 196 - -
Lja5g0837 196 MobiDBLite consensus disorder prediction 176 196 - -
Lja5g0837 196 SUPERFAMILY RNA-binding domain, RBD 3 84 IPR035979 GO:0003676
Lja5g0837 196 MobiDBLite consensus disorder prediction 140 159 - -
Lja5g0837 196 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 80 IPR000504 GO:0003723
Lja5g0837 196 MobiDBLite consensus disorder prediction 143 159 - -
Lja5g0837 196 SMART rrm1_1 8 82 IPR000504 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0837 8 155 Eukaryotic Initiation Factors Gene Family AT1G49760 26.351 2.16e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0837 K12831 - gmx:100803118 320.857