Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0835 ATGAAGGATATGGAAGATTCAGAGGAAGAGGAGCTTCTGAATCTGAGCCTCTCAGTTCCTGCTGATAGAGAGAGAAAGAGGAAAGGAAAAACAACAAGGGAAAGTGGTGTTTGTGTGAGTGTTACAAGAAACACCTACGAAGGCTGTGAAGGGAAAATCTTCAGGCTTCTCCAAATGAGAGAGCAAATGCTGAGACAAGATCAAAGGAGAAAAGATGAGAATAATGGTCTTCCCTTAATCCACTTGCTTCTCACAACAGCTACTTCAGTTGATGAAACCAACTTGGATGCCTCTTTGGAGAATCTCACAGATTTGTACCAAACAGTTTCCCTAACAGGTGACTCAGTTCAAAGAGTGGTGGCCTATTTTGCAGATGGCTTAGTTGCAAAGCTCCTCACAAAAAAATCTCCATTCTATGACATGGTGATGGAGGAGCCAACAAGTGATGAAGAGTTCTTAGCCTTCACAGATCTCTACAGAGTCTCACCTTACTACCAGTTTGCTCACTTCACAGCAAACCAAGCCATCTTAGAAGCCTTTGAGAAAGAAGAACAGAAAAACAACAAATCCCTTCATGTCATTGACTTTGATGTCTCCTATGGCTTCCAATGGCCTTCACTCATCCAATCCCTCTCAGAAAAAGCCACAAGCAACAACAGAATCTCACTCAGGATCACAGGGTTTGGAAAAAACATGAAGGAGCTTCAAGAAACTGAATCAAGACTAGTTAGCTTCTCAAAAGGGTTTCACAACCTTGTTTTCGAGTTCCAAGGCTTGTTGAGAGGGTCAAGGGTGATTAACTTGAGGAAGAAAAAGAATGAAACTGTGGCGGTTAACTTGGTTTCTTATCTAAACACTTTGAGCTGTTTCATGAAGGTTTCTGACACATTGGGATTTGTTCATTCCCTTAACCCTTCCATTGTTGTGCTTGTGGAGCAAGAAGGTGGGAGGTGTTCTAGAACATTCTTGTCAAGGTTCACTGATTCTCTTCACTACTTTGCAGCCATGTTTGATTCTTTGGATGATTGTCTTCCATTGGAGAGTGCTGAGAGGTTGAGGATTGAGAAGAAGCTTCTTGGGAAAGAGATCAAGAGCATGCTCAACTATGATGTTGATGGTGTTGGGGATTGTCCAAAATATGAGAGGATGGAGACATGGAAGTTGAGAATGGAGAATCATGGGTTTGGTGGAATGAAAATAAGCTCAAAGTCTATGATTCAAGCCAAATTGCTTTTGAAGATGAGGACTAATTATTGTCCACTACAGTTTGAGGAAGATGGAGGTGGTGGTGGGGGTTTCAGGGTTTCTGAAAGAGATGAAGGAAGGGCTATCTCATTAGGGTGGCAAAATAGGTTTCTACTTACAGTATCAGCATGGCAACCACTCTGA 1389 0.4212 MKDMEDSEEEELLNLSLSVPADRERKRKGKTTRESGVCVSVTRNTYEGCEGKIFRLLQMREQMLRQDQRRKDENNGLPLIHLLLTTATSVDETNLDASLENLTDLYQTVSLTGDSVQRVVAYFADGLVAKLLTKKSPFYDMVMEEPTSDEEFLAFTDLYRVSPYYQFAHFTANQAILEAFEKEEQKNNKSLHVIDFDVSYGFQWPSLIQSLSEKATSNNRISLRITGFGKNMKELQETESRLVSFSKGFHNLVFEFQGLLRGSRVINLRKKKNETVAVNLVSYLNTLSCFMKVSDTLGFVHSLNPSIVVLVEQEGGRCSRTFLSRFTDSLHYFAAMFDSLDDCLPLESAERLRIEKKLLGKEIKSMLNYDVDGVGDCPKYERMETWKLRMENHGFGGMKISSKSMIQAKLLLKMRTNYCPLQFEEDGGGGGGFRVSERDEGRAISLGWQNRFLLTVSAWQPL* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0835 462 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 10 460 IPR005202 -
Lja5g0835 462 ProSiteProfiles GRAS family profile. 70 460 IPR005202 -
Lja5g0835 462 Pfam GRAS domain family 79 460 IPR005202 -
Lja5g0835 462 PANTHER OSJNBA0084A10.13 PROTEIN 10 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0835 Lja-Chr5 7935155 7937243 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0835 73 460 GRAS Transcription Factor Family AT1G14920 33.251 2.52e-54 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lja5g0835 GRAS 2e-89 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0835 - - gmx:100809458 748.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0835 5 7935155 7937243 Lja5g0835 5 7935155 7937243 ECH