Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0833 ATGGATCCAAAAGGAAGCTTATGTGCTAACAACTGGGCAGGGTCCTCTTCTTCCTCAGATCCTCCTCCTTTCTATGGGGTCAGGACTGAAGCACCTTTCAAAGAATTTAACCAGTTCCCTCCAACTCACTCTGCACTTCCAGGTGAATCTAACAAGGTCCCTGATCAAGAAAGTTATCCGCCAAGGGACTCGTCACAAGCGAGTAAACTCCAAGATTGGGATCCAAGTGTGATGTTGAATAACCTTTCATTCCTGGAAGAAAAGATTCACCAGCTCCAGGATCTAGTGCATTTGATTGTCAACAAAAAATGCCAACCTTTTGCTCAGCCGCATGAGCTCGTGACTCAGGAACAGCAACTCGTCACAGCTGATCTTACATCAATTATTGTTCAGTTGATCTCTACAGCAGGTAGTCTTCTCCCATCTGTTCGGCACACCCTTACAAATACAAATCCATTGGTCAGTCAGCTCAGCCAGCTTCGTGGGATGAACCTTCCCTTCGGACCAGGCTCAAATATTGGTAATCAGATGCAGCCACAAAATAATAGTGGAAGTAAATTGTTTGATCAGTCCATTCAGAATGATCTACCTCATAACTGTGAAATGGAGCAAAACCACAATGTGGAAGAACATGAACATAAAGATGAGGAAGATGTGGATGATGGAGAGAACCTTCCTCCTGGTTCCTACGAGATTTTGCAATTAGAGAAAGAAGAAATCCTTGCACCTCATACGCATTTCTGTACAATATGCGGGAAGGGGTTCAAGAGGGACGCGAATCTCCGAATGCACATGCGAGGCCACGGTGATGAGTATAAAACACCAGCAGCTCTTGCAAAACCACATAAAGAAACCGGGTCTGAACCAAAGCTTATCAAGAGGTATTCCTGTCCCTACACCGGCTGCAAGCGTAACAAGGAACATAAGAAATTTCAGCCTCTGAAGACTATTTTATGTGTGAAAAACCACTACAAAAGAACACACTGTGATAAGAGTTACATTTGCAGCAGATGCCACACGAAGAAGTTTTCGGTCATCGCAGATCTCAAAACTCATGAGAAACACTGTGGCAGAGATAAGTGGCTGTGTTCATGTGGAACAACATTTTCGAGGAAAGACAAGCTTTTTGGACACATTGCCCTTTTCCAAGGCCATACACCAGCAATTCCTATGGATGACGCCAAAGGAATCGGCGAGCAGCGTGATCACTGTGAAACCAAAGAAAACAGCAGTAGGGTAGGAAGCATGAACTTCTGTTTTGGATCAAATCCTTCAAGTGATCAAAATGGAGTTCAAAACATTATGGATGTCAAAGGAGATATTGATGATCCTATCAGTTATTTCTCATCCCTGAACTTTGAAGGCTGTAACTTTGGTGGGTTTAATGAATTCTCACAGCCTCCATTTGAAGATTCCGAAGGTTCTTTCTCTTTCCTCATGTCCGGATCATTTAATTATGCTCCAAAGTCTGGGGGTGAACCATGTTCTGACAATCTGTAG 1500 0.4353 MDPKGSLCANNWAGSSSSSDPPPFYGVRTEAPFKEFNQFPPTHSALPGESNKVPDQESYPPRDSSQASKLQDWDPSVMLNNLSFLEEKIHQLQDLVHLIVNKKCQPFAQPHELVTQEQQLVTADLTSIIVQLISTAGSLLPSVRHTLTNTNPLVSQLSQLRGMNLPFGPGSNIGNQMQPQNNSGSKLFDQSIQNDLPHNCEMEQNHNVEEHEHKDEEDVDDGENLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKETGSEPKLIKRYSCPYTGCKRNKEHKKFQPLKTILCVKNHYKRTHCDKSYICSRCHTKKFSVIADLKTHEKHCGRDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPMDDAKGIGEQRDHCETKENSSRVGSMNFCFGSNPSSDQNGVQNIMDVKGDIDDPISYFSSLNFEGCNFGGFNEFSQPPFEDSEGSFSFLMSGSFNYAPKSGGEPCSDNL* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0833 499 MobiDBLite consensus disorder prediction 43 72 - -
Lja5g0833 499 MobiDBLite consensus disorder prediction 1 72 - -
Lja5g0833 499 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 25 483 - -
Lja5g0833 499 SMART c2h2final6 295 328 IPR013087 -
Lja5g0833 499 SMART c2h2final6 333 355 IPR013087 -
Lja5g0833 499 SMART c2h2final6 246 268 IPR013087 -
Lja5g0833 499 MobiDBLite consensus disorder prediction 9 23 - -
Lja5g0833 499 Gene3D Classic Zinc Finger 230 306 - -
Lja5g0833 499 SUPERFAMILY beta-beta-alpha zinc fingers 244 271 IPR036236 -
Lja5g0833 499 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 25 483 IPR044300 GO:0010044|GO:0010447
Lja5g0833 499 ProSiteProfiles Zinc finger C2H2 type domain profile. 246 273 IPR013087 -
Lja5g0833 499 ProSitePatterns Zinc finger C2H2 type domain signature. 248 268 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0833 Lja-Chr5 7921843 7924401 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0833 214 497 C2H2 Transcription Factor Family AT1G34370 69.178 2.88e-140 403
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja5g0833 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0833 - - gmx:100170687 803.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0833 5 7921843 7924401 Lja5g0833 5 7921843 7924401 ECH