Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0830 ATGGGAATTTGCAGGTATGAGTACAAAGCAACCTCTTTCCTGCTTATTACAACTTTACTCATGTTTGGGTTCTGTCCTCTGGTTTTGTCTCTGCTCTCTCAAAACCAAACAAACACCATGATCAATCTCTCCAATCTTCTCAACATCCCTGGTTGGAATGATTCCAAAGACCCTAATCCATGTGCATGGAAAGGGGTCAGTTGTGATCTTACAAACTCATCTGTGATCAAGATTATCCTATCTGGGTATTCTCTTGGTTCTTCAGAATTTCTTCCTGTTGTTTGCAAAATTGAAACTTTGCAGCACTTTGATGTCTCTAATAACCATCTGAGCTCTATCCCAGATGGGTTCATCTCTGAATGTGGAAAGATTGAGAGTATAAAGCTGCTGAATTTCAGTGGAATCAAGTTAAATGGTTTTTTGCCTACTCTTGATGGTTTTGAGGGTTTGGAAACCCTTGATTTGTCTTTCAATGGTTTGGAAGGGGAAATTGGTTTGCAGCTAGATGGATTGGCTAGCCTCAAGGTTTTGAATCTCAGTAACAATCACTTCACTGGGAATCTTCCTACCAACCTAGGAAAGTCTATGGTTTTGGAGCAGCTTCTGCTTTCAAAAAATCTTTTTGGAGGACCAATCCCAGATCAAATTTTGAGCTATAGAAATTTGACTGTGGTTGATTTTGATGAAAATCTTCTTTCTGGGCCAATCCCTATCAATATTGGGAACCTATCCAAATTGGAAAATTTGAGTCTTTCCTCTAATAGACTCGTTGGCGAAATCCCAGTAACGCTCATGAACATCACAACCCTTACAAGATTTGCAGCACATCAAAACCATTTCAGTGGTGCAATTCCTCTTGGAGTTTCAAAGTTCCTGAGGAATTTGGACCTTAGTTATAATAATTTATCTGAGTCCATTCCTGAAGACCTTTTATCTCCACCACTGTTGGTGGCTATTGATTTGTCCCATAACAAATTACAAGGGCCTTTACCTGCAAACATCTCTCCTAGTTTAGTCAGGTTGAGATTAGGGGGAAATTCCCTCACTGGAGCGATTCCTTCAGGTACTTGTCAAACCGTTCAAGATTTGACATACATGGAGCTGGACAGTAATAAGTTGACCGGTTCGATACCTCCCGACTTGGGTTCGTGCCGGAAATTGGCCTTGTTGAATTTGGCTGAGAACCAATTGACTGGTGCATTGCCTCCAGAACTTGGCAAACTTGGCAACCTTCAAGTCTTGAAGCTTCAAATGAACAAGCTTAATGGGACTATCCCAATTCAAATTGCTCAACTACACAAGTTATCTACCCTGAATTTGAGCCGGAATTCTCTGGATGGACCAATTCCATCTGAGCTATCAAGCTTGACATACCTCACATTCCTGCACTTGCAAGGAAACAATCTCAATGGTGCTATACCCTCATCCATTAGAAACTTGGGGTCTCTTATAGAACTTCAACTTGGGAAAAACCAGCTAAGTGGTGATATTCCACATATGCCTGTGAGTCTACAGATTGCTTTGAATCTCAGTAGCAACCACTTCAGTGGAACTATTCCTAGCAGTTTTGGTGATTTGGCTAACCTTGAAGTTTTAGATCTCTCAAATAACTACTTTTCTGGCACAATTCCTCAGTCTCTGACTAAAATGCTATCATTGACACAGCTGCTACTTTCAAACAATCATCTCACAGGTGTTCTTCCAGATTTTGGTTCTCATGTTAATATCGATAAAAGAGGAAATCATGTCACAGAAAATAGAAATGTCTCACCCAACAACAATTCTCCAAGAGCACAAAAGAATGGGAAATCTGTTGTTGCGGCAGTTCTTGCTGCAATTGCTGCTGCTGTTTTTCTGGTTGGCCTGGTCACCCTGGTGGTTTTATCAATCTCCCGACACTATACCAGGGTTAACGTCGAACAAATGCAGACCGGTGAAGGTGAAAATCTTCATCTTCCTCCTCAGGTCACTCATAGTAGTTTGTTAACTCCAAACAGGATCCATATATCAAACATTGACTTCTCCAAGGCCATGGAAGCTGTTGCTGAAACATCAAACATTACACTGAAAACCAGGTTTTCAACTTATTATAAGGCCACTATGCCTTCTGGATCAATCTACACTGTCAAGAAGCTTAACTGGAGTGACAAGATATTCCCGGGTAGCAGCCTTGATAAATTTGGGAGAGAGCTTGATGTCTTGGCAAAGTTGAACAATTCGAATGTCATGGTTCCCCTAGCCTATATTTTGTCCACTGACAGTGCTTATATATTGTATGAGTATGTCTCGAACGGCTCCCTTTTCGATGTGCTGCATGGAAGCATGGGAGGAAACTCATTAGATTGGGCTAGCAGATATAGTATAGCTGTTGGGGTGGCTCAGGGTCTCTCTTTTCTGCATGGATTTTCCTCTGGTCCAATACTTCTCCTTGACTTGTCTAGTAAGAGTATTATGCTGAAATCCCTCAAGGAGCCTCTAGTTGGGGATATTGAACATTATAGGGTGATTGATCCCTCCAAGAGTACAGGGAGTTTTTCTGCAGTTGCTGGTTCAGTTGGCTATATTCCTCCAGAGTATGCATACACCATGAGAGTAACAATGGCAGGGAATGTCTATAGCTTTGGGGTCATTTTACTGGAATTGCTGACAGGAAAACCTGCAGTGACTGAAGGCACTGAATTGGTCAAGTGGGTTTTGTGCAATTCAAGAAATCAAGATTACATTCTTGATTTTAGTGCTAGTAGAACATCACAGGCTTGCAGAAACCAGATGCTTGCAACTCTGAAGATTGCTCTTGGTTGTGTGAGCACATCCCCTGAAGCAAGACCAAAGATGAAGACTGTGCTACGGATGTTGCTAAATGCTAGATAA 2871 0.4152 MGICRYEYKATSFLLITTLLMFGFCPLVLSLLSQNQTNTMINLSNLLNIPGWNDSKDPNPCAWKGVSCDLTNSSVIKIILSGYSLGSSEFLPVVCKIETLQHFDVSNNHLSSIPDGFISECGKIESIKLLNFSGIKLNGFLPTLDGFEGLETLDLSFNGLEGEIGLQLDGLASLKVLNLSNNHFTGNLPTNLGKSMVLEQLLLSKNLFGGPIPDQILSYRNLTVVDFDENLLSGPIPINIGNLSKLENLSLSSNRLVGEIPVTLMNITTLTRFAAHQNHFSGAIPLGVSKFLRNLDLSYNNLSESIPEDLLSPPLLVAIDLSHNKLQGPLPANISPSLVRLRLGGNSLTGAIPSGTCQTVQDLTYMELDSNKLTGSIPPDLGSCRKLALLNLAENQLTGALPPELGKLGNLQVLKLQMNKLNGTIPIQIAQLHKLSTLNLSRNSLDGPIPSELSSLTYLTFLHLQGNNLNGAIPSSIRNLGSLIELQLGKNQLSGDIPHMPVSLQIALNLSSNHFSGTIPSSFGDLANLEVLDLSNNYFSGTIPQSLTKMLSLTQLLLSNNHLTGVLPDFGSHVNIDKRGNHVTENRNVSPNNNSPRAQKNGKSVVAAVLAAIAAAVFLVGLVTLVVLSISRHYTRVNVEQMQTGEGENLHLPPQVTHSSLLTPNRIHISNIDFSKAMEAVAETSNITLKTRFSTYYKATMPSGSIYTVKKLNWSDKIFPGSSLDKFGRELDVLAKLNNSNVMVPLAYILSTDSAYILYEYVSNGSLFDVLHGSMGGNSLDWASRYSIAVGVAQGLSFLHGFSSGPILLLDLSSKSIMLKSLKEPLVGDIEHYRVIDPSKSTGSFSAVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELLTGKPAVTEGTELVKWVLCNSRNQDYILDFSASRTSQACRNQMLATLKIALGCVSTSPEARPKMKTVLRMLLNAR* 957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0830 956 Pfam Leucine rich repeat N-terminal domain 48 69 IPR013210 -
Lja5g0830 956 Gene3D Transferase(Phosphotransferase) domain 1 762 956 - -
Lja5g0830 956 SMART LRR_typ_2 360 384 IPR003591 -
Lja5g0830 956 SMART LRR_typ_2 97 120 IPR003591 -
Lja5g0830 956 SMART LRR_typ_2 336 359 IPR003591 -
Lja5g0830 956 SMART LRR_typ_2 290 313 IPR003591 -
Lja5g0830 956 SMART LRR_typ_2 550 573 IPR003591 -
Lja5g0830 956 SMART LRR_typ_2 243 267 IPR003591 -
Lja5g0830 956 SMART LRR_typ_2 526 549 IPR003591 -
Lja5g0830 956 SMART LRR_typ_2 432 456 IPR003591 -
Lja5g0830 956 SMART LRR_typ_2 408 431 IPR003591 -
Lja5g0830 956 SMART LRR_typ_2 171 195 IPR003591 -
Lja5g0830 956 Pfam Protein kinase domain 693 950 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g0830 956 ProSiteProfiles Leucine-rich repeat profile. 291 312 IPR001611 GO:0005515
Lja5g0830 956 Gene3D Phosphorylase Kinase; domain 1 652 761 - -
Lja5g0830 956 SUPERFAMILY RNI-like 260 583 - -
Lja5g0830 956 SUPERFAMILY Protein kinase-like (PK-like) 692 952 IPR011009 -
Lja5g0830 956 Gene3D Ribonuclease Inhibitor 292 590 IPR032675 -
Lja5g0830 956 ProSiteProfiles Protein kinase domain profile. 682 956 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g0830 956 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 14 953 - -
Lja5g0830 956 SUPERFAMILY L domain-like 44 333 - -
Lja5g0830 956 Gene3D Ribonuclease Inhibitor 30 190 IPR032675 -
Lja5g0830 956 Gene3D Ribonuclease Inhibitor 191 291 IPR032675 -
Lja5g0830 956 PANTHER F12K21.25 14 953 - -
Lja5g0830 956 Pfam Leucine rich repeat 508 563 IPR001611 GO:0005515
Lja5g0830 956 Pfam Leucine rich repeat 410 469 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0830 Lja-Chr5 7894185 7898125 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0830 150 956 Receptor kinase-like Gene Family AT2G41820 38.607 7.31e-150 464
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Lja5g0830 Pkinase 5.7e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0830 - - gmx:100796647 1199.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0830 5 7894185 7898125 Lja5g0830 5 7894185 7898125 ECH