Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0828 ATGGGGGATTCCTATTCCATCAAAGATGAGCAGGTTAAATTTTCCTCTAATCAAACAGAGGATGGTGCTTGCTTATCAGCACTGCTGCTCAGTACTAATATAGTATACCCTGCAGTTTTGAATGCTGCTATTGAACTCAACTTGTTTGAGATCATAGCTAAAGCAACACCACCTGGTGCATTCATGTCACCTTCTGAAATTGCTTCTCAGATGCCATTGCCAACCCAACACCCAGACTTGCCTAACAGGCTTGAACGCATGCTGCGTTTGCTTGCAAGTTACTCCGTTCTTACTTGTTCCACTCGCATCGCTGAACATGGTAGCACTGAGAGAGTTTATGGACTCTCACAAGTTGGAAAATACTTAGTCCCTGGTGCGAGTATGGGCTACTTGGCTTCATTTGTTTCATTTCTCTGCTATCCACCACTGTTACAGGTTTGGTTGAACTTAAAGGAAGCTGTTGTTGATGCTGATAGTGACCGGTTCACGAAACGTCATGGAGTAACCATGTTCCAGTACATGGAAAAGGATCCAAAAATGAACCAAATTTTTAACAAGGCAATGGGCGATCTGTGTGAAACAGAGATGAAAAGAATACTTGAAATCTATACTGGATTTGAGGGAATATCAACATTGGTTGATGTTGGAGGTGGGAATGGACAAAATCTCAAAATGATAATCTCCAAGTACCCTTTGATAAATGGAATTAATTTTGATCTGCCCCAGGTGATTGAAAATGCACCATTGATTCCAGGGATTGAGCATGTTGGAGGTGATATGTTTGAAAGTGTTCCACAGGGTGATGCCATAATAATTAAGGCCGTAATCCACAATTGGTCAGATGAAAAATGCGTACAAGTTTTAAGAAATTGTCACAAAGCATTGTCGCCAAAGGGGAAGGTGATTGTTGTGGAGTTAATATTGCCAGAAGAACCAGAACCAACTGAAGAATCCCAACTTGTTTCTAGTCTTGACAATATCATGTTCATCACAGCTGGTGGAATGGAAAGAACTGAGAAAGAATATGAGAATCTGTGCAAGCTCTCTGGATTTTCTAAATTTAATGTTGCTTGTCGCGCTTTCTCGAGTTTGGGAATGATGGAGTTTTATAAATAA 1116 0.4068 MGDSYSIKDEQVKFSSNQTEDGACLSALLLSTNIVYPAVLNAAIELNLFEIIAKATPPGAFMSPSEIASQMPLPTQHPDLPNRLERMLRLLASYSVLTCSTRIAEHGSTERVYGLSQVGKYLVPGASMGYLASFVSFLCYPPLLQVWLNLKEAVVDADSDRFTKRHGVTMFQYMEKDPKMNQIFNKAMGDLCETEMKRILEIYTGFEGISTLVDVGGGNGQNLKMIISKYPLINGINFDLPQVIENAPLIPGIEHVGGDMFESVPQGDAIIIKAVIHNWSDEKCVQVLRNCHKALSPKGKVIVVELILPEEPEPTEESQLVSSLDNIMFITAGGMERTEKEYENLCKLSGFSKFNVACRAFSSLGMMEFYK* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0828 371 Pfam O-methyltransferase domain 147 352 IPR001077 GO:0008171
Lja5g0828 371 CDD AdoMet_MTases 211 304 - -
Lja5g0828 371 PIRSF O-mtase 5 371 IPR016461 GO:0008168
Lja5g0828 371 PANTHER CAFFEIC ACID O-METHYLTRANSFERASE 1 371 - -
Lja5g0828 371 Pfam Dimerisation domain 39 92 IPR012967 GO:0046983
Lja5g0828 371 SUPERFAMILY "Winged helix" DNA-binding domain 21 125 IPR036390 -
Lja5g0828 371 PANTHER O-METHYLTRANSFERASE 1 371 IPR016461 GO:0008168
Lja5g0828 371 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 131 362 IPR029063 -
Lja5g0828 371 Gene3D Vaccinia Virus protein VP39 126 371 IPR029063 -
Lja5g0828 371 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 28 371 IPR016461 GO:0008168
Lja5g0828 371 Gene3D - 4 122 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0828 Lja-Chr5 7874212 7875652 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0828 19 371 Monolignol Biosynthesis Gene Families AT5G54160 49.153 6.46e-112 329
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0828 - - gmx:100798347 575.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0828 5 7874212 7875652 Lja5g0828 5 7874212 7875652 ECH