Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0827 ATGGGAGATTCCTATTCCACCAAAGATGAGCAGTTCAAAACTTCCCCTGAACAAACAGAGGATGCTGCTTGCTTATCAGCAATGCTGGCCTGTACCAATATAGTATACCCTGCAGTTCTGAATGCTGCAATTGAACTCAACTTATTTGAGATCATAGCTAAGGCAACACCACCTGGTGCCTTCATGTCACCCACTGAAATTGCTTCTAAGATCCCAACCCAACACTCAGATTTACCAAACAGGCTTGAACGCATGCTGCGTTTGCTTGCAAGTTACTCCATTCTTACTTTCTCCACTCGCACCACTGAACATGGTAGCACTGAGAGAGTTTATGGGCTCTCCCAAGTTGGAAAATACTATGCCCCTGATGAAAGTCAGGGCTACTTGGCTTCCTTTGTTCCATTTCTCTACTATCCACCACTGCTACAGGTTTGGTCGAACTTCAACGAAGCGGTGGTTGACGAAGACATTGATGTGTTTAAGAAACTTCATGGTGTGACCAAGTACCAGTACATGGAAAAGGATCAAAAAATGAACCAAATCTTTAACAAGGCAATGGTCGATATCTGTGCAACAGAGATGAAAAGAATGCTTGCAATATATACTGGATTTGAGGGAATATCAACATTGGTTGATGTTGGAGGTGGACATGGACAAAATCTCAAAATGATAACCTCCAAGTACCCTTTGATAAAGGGTATCAATTTTGATCTGCCCCAAGTTATTGAAAATGCACAATTGATTCCAGGGATTGAGCATGTTGGAGGAGATATGTTTGCAACTGTTCCCCATGGTGATGCCATAATACTCAAGGCTGTGTGCCATAATTGGTCAGATGAAAAATGTGTAGAATTTTTAAGCAATTGTCACAAAGCATTGTCACCAAAGGGGAAGGTGATTGTTGTGGAGTTTATATTGCCAGAAGAACCAAAAGCAACTGAAGAATCCCAACTTGTTTCTAGTCTCGACAATATCATGTTCATCACAGCTGGTGGAAGGGAAAGGACTGAGAAACAGTTTGAGAATTTGTGCAAGCTCTCTGGATTTTCCAAATTTCAAGTTGCTTGTCGCGCTTTCTCTACTTTAGGAGTGATGGAATTCTATAAATAG 1110 0.4153 MGDSYSTKDEQFKTSPEQTEDAACLSAMLACTNIVYPAVLNAAIELNLFEIIAKATPPGAFMSPTEIASKIPTQHSDLPNRLERMLRLLASYSILTFSTRTTEHGSTERVYGLSQVGKYYAPDESQGYLASFVPFLYYPPLLQVWSNFNEAVVDEDIDVFKKLHGVTKYQYMEKDQKMNQIFNKAMVDICATEMKRMLAIYTGFEGISTLVDVGGGHGQNLKMITSKYPLIKGINFDLPQVIENAQLIPGIEHVGGDMFATVPHGDAIILKAVCHNWSDEKCVEFLSNCHKALSPKGKVIVVEFILPEEPKATEESQLVSSLDNIMFITAGGRERTEKQFENLCKLSGFSKFQVACRAFSTLGVMEFYK* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0827 369 Pfam Dimerisation domain 39 90 IPR012967 GO:0046983
Lja5g0827 369 PIRSF O-mtase 5 369 IPR016461 GO:0008168
Lja5g0827 369 PANTHER CAFFEIC ACID O-METHYLTRANSFERASE 1 369 - -
Lja5g0827 369 Gene3D - 4 120 IPR036388 -
Lja5g0827 369 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 28 369 IPR016461 GO:0008168
Lja5g0827 369 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 127 367 IPR029063 -
Lja5g0827 369 Pfam O-methyltransferase domain 145 350 IPR001077 GO:0008171
Lja5g0827 369 PANTHER O-METHYLTRANSFERASE 1 369 IPR016461 GO:0008168
Lja5g0827 369 SUPERFAMILY "Winged helix" DNA-binding domain 21 124 IPR036390 -
Lja5g0827 369 CDD AdoMet_MTases 209 306 - -
Lja5g0827 369 Gene3D Vaccinia Virus protein VP39 121 369 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0827 Lja-Chr5 7869723 7871473 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0827 6 369 Monolignol Biosynthesis Gene Families AT5G54160 47.123 1.31e-110 326
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0827 - - gmx:100787536 617.461