Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0826 ATGGGGGATTTCTATTCCACCAAAGTTGAGCAGCTTAAATTTTCCTCTAATCAAACAGAGGATAGTGCTTGCTTATCAGCAATGCTGGCCAGTACCAATATAGTATACCCTGCAGTTTTGAATGCTGCTATTGAACTCAACTTGTTTGAGATCATTGCTAAGGCAACACCATCTGGTGCATTCAAGTCACCCTCTGAAATTGCTTCCAAGATCCCAACCCAACACTCAGACTTGCCTAACAGGCTTGAACGCATGCTGCGTTTGCTCGCAAGTTACTCCGTTCTTACTTGTTCCACTCGCACCACTGATAATGGTAGCACTGAGAGAGTTTATGGGCTCACAGAAGTTGGAAAATACTATGTCCCTGATGAGAATAGGGGCAACTTGGCTTCACATGTTTCACTTCTCTGCTATCCAGCATTGTTACCGATTTGGTTGAACTTCAAGGAAGCGGTAGTTGATGAAGACGCTGATCTGTTCAAAAAACATCATGGAATAACCATGTACCAGAACTTGGAAAAGGATCCGAAAATGAACCAAGTTTTCAACAAGGCAATGATCGGTATCTGTGCAGTATTTATGAAAAAAGTAGTTGAAATCTATACTGGATTTGAGGGAATATCAACATTGGTTGATGTTGGAGGTGGAAATGGACAATATCTCAAGATGATCATCTCCAAGTACCCTTTGATCAAGGGAATTAATTTTGATCTGCCTCAAGTGATTGAAAATACACCATTGCTTCCAGGGATTGAGCATGTTGGAGGAGATATGTTTGCAAGTGTTCCACAGGGTGATGCAATAATACTAAAGTCTGTACTCCACAATTGGTCAGATGAAAAATCTGTAGAAAATTTAAGCAATTGTCACAAAGCATTGTCACATAATGGGAAGGTGATTGTTGTGGAGTTAGTGTTGCCAGAAGAACCAGAACCAACTCAAGAATCCCGAACCATTTCTAGTATCGACAACATCATGTTTATCACAGCTGGTGGAAAGGAAAGAACTGAGAAAGAGTTTGAGAATCTTTGGCAAACTCTCTGGATTTTCTAA 1053 0.4065 MGDFYSTKVEQLKFSSNQTEDSACLSAMLASTNIVYPAVLNAAIELNLFEIIAKATPSGAFKSPSEIASKIPTQHSDLPNRLERMLRLLASYSVLTCSTRTTDNGSTERVYGLTEVGKYYVPDENRGNLASHVSLLCYPALLPIWLNFKEAVVDEDADLFKKHHGITMYQNLEKDPKMNQVFNKAMIGICAVFMKKVVEIYTGFEGISTLVDVGGGNGQYLKMIISKYPLIKGINFDLPQVIENTPLLPGIEHVGGDMFASVPQGDAIILKSVLHNWSDEKSVENLSNCHKALSHNGKVIVVELVLPEEPEPTQESRTISSIDNIMFITAGGKERTEKEFENLWQTLWIF* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0826 350 Pfam Dimerisation domain 39 90 IPR012967 GO:0046983
Lja5g0826 350 SUPERFAMILY "Winged helix" DNA-binding domain 20 124 IPR036390 -
Lja5g0826 350 PANTHER O-METHYLTRANSFERASE 1 344 IPR016461 GO:0008168
Lja5g0826 350 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 28 350 IPR016461 GO:0008168
Lja5g0826 350 PIRSF O-mtase 5 346 IPR016461 GO:0008168
Lja5g0826 350 PANTHER CAFFEIC ACID O-METHYLTRANSFERASE 1 344 - -
Lja5g0826 350 Gene3D - 5 120 IPR036388 -
Lja5g0826 350 Pfam O-methyltransferase domain 145 344 IPR001077 GO:0008171
Lja5g0826 350 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 127 344 IPR029063 -
Lja5g0826 350 Gene3D Vaccinia Virus protein VP39 121 347 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0826 Lja-Chr5 7863991 7865536 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0826 19 343 Monolignol Biosynthesis Gene Families AT5G54160 48.466 4.13e-104 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0826 - - gmx:100798347 508.834