Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0821 ATGGATATGGAATCATGTGTGCCTCCAGGATTCAGATTTCATCCAACAGAAGAGGAGCTTGTGGGGTATTACCTCAAGAGGAAGATAAACTCACTGAAAATCGATCTAGATGTTATTGTTGAGGTCGATCTCTACAAAATAGAACCATGGGACATACAAGATAGGTGCAAGCTAGGATACGAGCAACAGAACGAGTGGTACTTTTTCAGCCACAAGGATAAGAAATATCCAACAGGGACAAGAACTAACAGGGCCACTGCTGCTGGATTCTGGAAAGCAACTGGAAGGGACAAGGCTGTGATGTCCAAAAACAGAATAATAGGGATGAGGAAGACCCTGGTGTTCTACAAAGGAAGAGCCCCAAATGGGAGGAAAACTGACTGGATCATGCATGAGTATAGGCATCAAACCTCTGAACATGGCCCTCCACAGGAAGAAGGCTGGGTTGTGTGCAGAGCATTTCGAAAGCCAAGTCCAAGTCACAGGCAAGGTTTTGAGTCATGGTGCACCAACCAACCACAGTTTTTCAGAGACCATCATCATCAAAGCTATACAAGGCCCTTATCAATTACAGATATTTTAAACGAAACTAATAATGTTCTTCATCCTGCTGAAGGCACGAGTTATAGTAGCCACCCTTTCAGCTCAGAGCAACCGTTTCTACCTAACCAAACTGTCATGGACAAACAACAACTCATTGAGCTTCCACAACTAGATAGCCCCACTGCAAGTTTAGCACTCAATGAACAACGTCTTAATGGCCTAACAACAAATGAAGATCATTGCAGTGATGAAAGGAGCAATAACAGTGGACAAGTTGGCATTGATTGGAAAAGCTTGGACAGCTTGTTCACTTCACAATTTACAGATACCACTAATTACTTTTCACATCCACATAACTTGCCCATGATGGTTCCCCATGGCCATGAGCTACAACCTCAAAATCAACCTAATCATGTCCTAGGATGCTTTCCTGATTTATAA 984 0.4299 MDMESCVPPGFRFHPTEEELVGYYLKRKINSLKIDLDVIVEVDLYKIEPWDIQDRCKLGYEQQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAVMSKNRIIGMRKTLVFYKGRAPNGRKTDWIMHEYRHQTSEHGPPQEEGWVVCRAFRKPSPSHRQGFESWCTNQPQFFRDHHHQSYTRPLSITDILNETNNVLHPAEGTSYSSHPFSSEQPFLPNQTVMDKQQLIELPQLDSPTASLALNEQRLNGLTTNEDHCSDERSNNSGQVGIDWKSLDSLFTSQFTDTTNYFSHPHNLPMMVPHGHELQPQNQPNHVLGCFPDL* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0821 327 PANTHER NAC DOMAIN-CONTAINING PROTEIN 30 5 299 - -
Lja5g0821 327 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 5 299 - -
Lja5g0821 327 SUPERFAMILY NAC domain 5 156 IPR036093 GO:0003677|GO:0006355
Lja5g0821 327 Pfam No apical meristem (NAM) protein 8 134 IPR003441 GO:0003677|GO:0006355
Lja5g0821 327 Gene3D NAC domain 16 159 IPR036093 GO:0003677|GO:0006355
Lja5g0821 327 ProSiteProfiles NAC domain profile. 7 156 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0821 Lja-Chr5 7794649 7797336 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0821 3 326 NAC Transcription Factor Family AT1G71930 53.913 4.22e-117 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lja5g0821 NAM 5.6e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0821 - - gmx:100812904 520.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0821 5 7794649 7797336 Lja5g0821 5 7794649 7797336 ECH