Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0813 ATGGGTACCTCGAATCTTGTCTTGCTTTTCTTCTCTCTGCTGTGTTTTTCTGCTTTGGCGGCTGCTAAGGTTGTACTGATTGGGAACAACATCACTCTCTCATTCGATGATATTGAAGCTAATTTCGCTCCGGCAGTCAAAGGGTCTGGAGAAGCTGGTGTCTTATATTTAGCAGAGCCCCTTGATGCATGTACAGAACTGACAAATAAAGTTGAACAACTTCCAAATGTGTCCTCACCTTATGTTTTGTTGATTAGAGGGGGATGTAGCTTCGAGGAAAAGGTGAGAAGGGCACAAAGTGCTGGCTTCAAAGCTGCAATTGTCTATGACAATGAAGATGGTGGTGTCTTGGTTGCAATGGCAGGAAATTCAGCTGGTATAAGAATACATGCTGTGTTTGTATCAAAAGCTTCGGGTGAAATACTAAAGAAATACACTGGGTTGACTAATGTGGAAACATGGCTCATTCCGACTTTTGAAAACTCAGCTTGGTCTATCATGGCCATCTCGTTCATTTCCCTACTAGCTATGTCTGCAGTGCTGGCCACTTGCTTCTTCGTCCGCAGACATCGCATAAGAAGAGAAAGGCCTCGAGCTTCTCGTGTTCGTGAATTTCATGGTATGAGTAGTCGCCTAGTGAAAGCAATGCCAAGTTTGATATTTACTGCTGTTTTGGAAGATAACTCTACATCAGGAACTTGTGCTGTCTGCCTTGAAGACTATTGCGTTGGAGAGAAGCTCAGAATTCTTCCCTGCTGTCACAAGTTTCATGCTGCCTGTGTGGATTCTTGGCTTACTTCATGGAGAACCTTCTGTCCAGTTTGCAAGCGCGATGCTAGAACTGGCCTTAGTGAACCACCACCTTCAGAATCCACACCTCTGCTCTCATCGACACCAGCATCCGTGGCATCCTCTGTCTTATCTTCTGTGAGGTCATCATTTGCTTCATCTTCAGCAATACAAATTTCTCGGGCAGCTTCACAATCCAACCACTCTTTAGCTAGTACCCCTTGTCTTCCACCATCCATGAGGTCCTTCCGTCAGTCCCCTTCCCTAAGCATCAGCCGCAGCTCTGTAGATCTTAGGAACGCTTCCCAAAGATCTCTAGCTTCTCACTTGAATTCAGCATATTCCATCGGATACCCATCCATGTCACCTCTTAACTCAAGGTACATGTCTCCACACATTCCGAGTCCAAGCAATGCTTCAGTGAGTTATATTGGTTCTTCCAGTCACCAACAACGTACACTCCGGTATAGTGAGTCAACAGCAAGTTTTATTGGTTCTTCCAGTCATCAACAGCATCCACTCCGGTACAGCGAATCGGCGGCGAGCTTCTCACCGTTTGCATCTGCAAACTCCCTCCCAGAATGTTAA 1377 0.4568 MGTSNLVLLFFSLLCFSALAAAKVVLIGNNITLSFDDIEANFAPAVKGSGEAGVLYLAEPLDACTELTNKVEQLPNVSSPYVLLIRGGCSFEEKVRRAQSAGFKAAIVYDNEDGGVLVAMAGNSAGIRIHAVFVSKASGEILKKYTGLTNVETWLIPTFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRRERPRASRVREFHGMSSRLVKAMPSLIFTAVLEDNSTSGTCAVCLEDYCVGEKLRILPCCHKFHAACVDSWLTSWRTFCPVCKRDARTGLSEPPPSESTPLLSSTPASVASSVLSSVRSSFASSSAIQISRAASQSNHSLASTPCLPPSMRSFRQSPSLSISRSSVDLRNASQRSLASHLNSAYSIGYPSMSPLNSRYMSPHIPSPSNASVSYIGSSSHQQRTLRYSESTASFIGSSSHQQHPLRYSESAASFSPFASANSLPEC* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0813 458 ProSiteProfiles Zinc finger RING-type profile. 234 276 IPR001841 -
Lja5g0813 458 SUPERFAMILY RING/U-box 213 288 - -
Lja5g0813 458 CDD mRING-H2-C3H2C2D_ZSWM2 233 276 - -
Lja5g0813 458 Pfam Ring finger domain 233 276 IPR001841 -
Lja5g0813 458 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 1 363 - -
Lja5g0813 458 Pfam PA domain 82 142 IPR003137 -
Lja5g0813 458 PANTHER PROTEASE-ASSOCIATED (PA) RING/U-BOX ZINC FINGER PROTEIN 1 363 - -
Lja5g0813 458 Gene3D - 21 155 - -
Lja5g0813 458 SMART ring_2 234 275 IPR001841 -
Lja5g0813 458 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 194 281 IPR013083 -
Lja5g0813 458 SUPERFAMILY PA domain 76 145 IPR046450 -
Lja5g0813 458 CDD PA_C_RZF_like 11 163 IPR044744 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0813 21 457 C3H Transcription Factor Family AT1G22670 48.533 4.88e-121 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0813 K15692 - gmx:100791248 629.017