Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0805 ATGGCCGCCGGCAACTCCTCATCTCCCTCCCCCTCCGTATTTTCTCACGAGATTTTGAATTTCTCCCCCGATTCCCCCACCCCAATCTCTCTCACTCCCGACCAGCTCAAGCACTGCACCCAAGCGCTCTCCTTGTTCAAGCAGAAGCTCCTCAATCCTCACACCATCTCCCAAGAGTTCGCTTACTTGCAGACGAACAGGTTTACACCGAGTCAGATGAAGAGGAGTTGCAACGTTGCTCTTGATCCTGTCAATTCCAGCAAGAATCGATACACTGATGTGATCCCATTTGATAAGAACAGGGTTGTTCTGAAATCAAGCACTGATTATAGGCCTGCAGCATTGGGGTATATCAATGCAAGCTTTGTCTCGACATCTTCCCCTGGAGTTGTAGCATCCCAATTTATAGCCACACAAGGCCCGCTGCCGCACACATATGAGGATTTATGGGAAATGGTTATCCAATATCACTGCCCTGCAATTGTGATGCTTACTAGGTTGGTCGACAATTACAAGATGGTAAAGTGTGGAGATTACTTTCAATCTGAGGATGGACCTAGAGAATTTGGAAATATCTCTGTTAACTGTAAATGGGCGAAAACCACTGAAGCTTCGTTGGTGCTGCGCCATTTAGAGGTGAACCGTAGCGAGGGTGAAGGTGCACCATTATCTGTTTTGCATATTCAGTATCCTGAATGGCCTGACCATGGAGTTCCGAAAGATACATCTGCTGTGCGTGAAATTTTGAAAAGATTATACCATTTACCACCAAACCTTGGCCCAATAGTGGTGCACTGCAGTGCAGGTATTGGTAGAACTGGAACATACTGCACCATTCACAACGCTATTCAGAGAATACTAGCTGGGGATATGTCTGCTGTAGATATTGCAAACACAGTAGCTATGTTCAGGTCCCAGCGTATCGGAATGGTACAGACTCAGGAACAGTATATTTTCTGCTATGAAGCTATCATGGATGAACTGGAAGACCTTGTATCTCAACAGCACTGA 1011 0.4609 MAAGNSSSPSPSVFSHEILNFSPDSPTPISLTPDQLKHCTQALSLFKQKLLNPHTISQEFAYLQTNRFTPSQMKRSCNVALDPVNSSKNRYTDVIPFDKNRVVLKSSTDYRPAALGYINASFVSTSSPGVVASQFIATQGPLPHTYEDLWEMVIQYHCPAIVMLTRLVDNYKMVKCGDYFQSEDGPREFGNISVNCKWAKTTEASLVLRHLEVNRSEGEGAPLSVLHIQYPEWPDHGVPKDTSAVREILKRLYHLPPNLGPIVVHCSAGIGRTGTYCTIHNAIQRILAGDMSAVDIANTVAMFRSQRIGMVQTQEQYIFCYEAIMDELEDLVSQQH* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0805 336 Gene3D Protein tyrosine phosphatase superfamily 31 336 IPR029021 -
Lja5g0805 336 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 246 318 IPR000387 GO:0016311|GO:0016791
Lja5g0805 336 PRINTS Protein tyrosine phosphatase signature 310 320 IPR000242 GO:0004725|GO:0006470
Lja5g0805 336 PRINTS Protein tyrosine phosphatase signature 294 309 IPR000242 GO:0004725|GO:0006470
Lja5g0805 336 PRINTS Protein tyrosine phosphatase signature 261 279 IPR000242 GO:0004725|GO:0006470
Lja5g0805 336 PRINTS Protein tyrosine phosphatase signature 116 123 IPR000242 GO:0004725|GO:0006470
Lja5g0805 336 PRINTS Protein tyrosine phosphatase signature 223 240 IPR000242 GO:0004725|GO:0006470
Lja5g0805 336 PRINTS Protein tyrosine phosphatase signature 135 155 IPR000242 GO:0004725|GO:0006470
Lja5g0805 336 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 36 329 IPR029021 -
Lja5g0805 336 PANTHER RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE 16 334 - -
Lja5g0805 336 SMART ptp_7 224 326 IPR003595 -
Lja5g0805 336 SMART PTPc_3 55 329 IPR000242 GO:0004725|GO:0006470
Lja5g0805 336 PANTHER PROTEIN-TYROSINE-PHOSPHATASE PTP1 16 334 - -
Lja5g0805 336 ProSiteProfiles PTP type protein phosphatase domain profile. 56 327 IPR000242 GO:0004725|GO:0006470
Lja5g0805 336 CDD PTPc_plant_PTP1 117 322 - -
Lja5g0805 336 Pfam Protein-tyrosine phosphatase 85 325 IPR000242 GO:0004725|GO:0006470
Lja5g0805 336 ProSitePatterns Tyrosine specific protein phosphatases active site. 264 274 IPR016130 GO:0016311|GO:0016791
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0805 34 333 Protein tyrosine phosphatase (PTP) family AT1G71860 69.333 1.67e-159 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0805 - - gmx:548044 527.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0805 5 7481568 7486395 Lja5g0805 5 7481568 7486395 ECH