Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0784 ATGGCTTCCTCTCAGTCCCAGCATCGTTGCGTTTTCGTTGGGAATATACCGTATGATGCCACAGAGGAACAGCTTATTGAAATCTGCCAGGAGGTTGGTCCTGTAGTATCATTCAGATTAGTTATTGACCGAGAAACCGGGAAACCGAAAGGCTATGGGTTCTGTGAGTATAAGGATGAAGAGACAGCTTTAAGTGCTCGTCGAAATCTTCAGGGTTATGAAATTAATGGGCGGCAGTTGCGTGTTGATTTCGCTGAAAATGATAAAGGGAATGATAGAAATAGAGAACAGGGTCGTGGTGGGCCTGGAATGACAGCAAATGTTGACACTCAGAAACAAGCAGGCATTCCAGTTGTTCATGGGGAAGCTGTTCAGCATCAACCTATTGGTCTTCATATTGCCATATCAGCAGCAACTGCCATGACAGCAGCTCTAGGTGGTCCTCAGTCTGGCATCCATTCTAACCAAAATAGTTTGCAGAGTCAGTCAGCATTGGCACATGATCCTTTAACTTTGCATCTGGCCAAAATGTCCAGGTTTCAATTGATTGAGGTTATCTCTGAGCTCAAGGGAATGGCTACACAAAACAATGATCTGGCTCGCCAGCTGTTGCTTTCGAGGCCACAGTTGCCCAAGGCACTTTTTCAGGCTCAGATAATGCTACAAATGGTGACCCCCCAAGTGTTACAAATGCCAAACCTTAGAATGGTTTCAGATCAAACCTCACCGTCTTTAGCGAATGAAGGTCCTGGGGGTCAGCCAGCATTGCTCCAAACTCTGTCTGGCCTACCTCTTTATGGACAGAATAAGATGCAATCTGGTTTGACACCTTATGTTGAAGAAGGCCAAGTCAGCATCATGCCTCATAATCCTTTGGCCCCTAATCAATTAACTGCTCATTCGAAGCCTCCTGTGCAGCCTAGAATACCCTTACAACATTATCCAACCAACCAAGTTGTACAGATTGGAACAATGTCAGGGCAATCTAATTTGGTACTTCCTTCTGTGCGTCCCCCATCTGGGGTCGATTTGCCTATTAGGCCTCCAATTCAACCGACAAGTTCAACTGCTTTGAACCAGCAAATGCAAGGCTCTTTGCCACATTCAGTACATGTTGGACGCTCAACTGGGGCACATAATATTCAAATGGTTCGTCCAGATACAAGCTTTCAGCCTGGCCCTTCCACGAGTAGCAGTGCATATTCAAATACTGGAGTAGAGAAAACAAACATGGTTCAGGATTTTTCAGAATCTTTCACTCACCCATCAAAATTCATGAGATCAGATAAGGGAAGGATCCCTTCTCTTCCTGCGGGGATTAAAGACTTGCCTGTCACCATTGGATCTTCCCATGTTCTTGGAAGTAGCTCATTACCTGCACCTACAGCCTCTAAAGCAGAAGTGCGGTACCCTGAGCCGCAATCTTCTCAGCCCCAGCTTCCACCTGATGTGGAGTCTGTTTTACTGCAACAAGTGTTGAATCTAACACCAGAGCAATTGAGTTCCTTGCCACCAGAGCAGCAACAACAGGTCATTCAGCTCCAGAAGTCTCTTCGACAAGATCATATGCAGCCTTCATAA 1581 0.4579 MASSQSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGNDRNREQGRGGPGMTANVDTQKQAGIPVVHGEAVQHQPIGLHIAISAATAMTAALGGPQSGIHSNQNSLQSQSALAHDPLTLHLAKMSRFQLIEVISELKGMATQNNDLARQLLLSRPQLPKALFQAQIMLQMVTPQVLQMPNLRMVSDQTSPSLANEGPGGQPALLQTLSGLPLYGQNKMQSGLTPYVEEGQVSIMPHNPLAPNQLTAHSKPPVQPRIPLQHYPTNQVVQIGTMSGQSNLVLPSVRPPSGVDLPIRPPIQPTSSTALNQQMQGSLPHSVHVGRSTGAHNIQMVRPDTSFQPGPSTSSSAYSNTGVEKTNMVQDFSESFTHPSKFMRSDKGRIPSLPAGIKDLPVTIGSSHVLGSSSLPAPTASKAEVRYPEPQSSQPQLPPDVESVLLQQVLNLTPEQLSSLPPEQQQQVIQLQKSLRQDHMQPS* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0784 526 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 9 87 IPR000504 GO:0003723
Lja5g0784 526 MobiDBLite consensus disorder prediction 451 485 - -
Lja5g0784 526 MobiDBLite consensus disorder prediction 498 526 - -
Lja5g0784 526 Gene3D - 482 523 IPR038192 -
Lja5g0784 526 MobiDBLite consensus disorder prediction 469 485 - -
Lja5g0784 526 Pfam Hinge domain of cleavage stimulation factor subunit 2 160 230 IPR025742 -
Lja5g0784 526 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 2 1 520 - -
Lja5g0784 526 SMART rrm1_1 10 83 IPR000504 GO:0003723
Lja5g0784 526 Gene3D - 1 115 IPR012677 -
Lja5g0784 526 MobiDBLite consensus disorder prediction 85 108 - -
Lja5g0784 526 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 81 IPR000504 GO:0003723
Lja5g0784 526 CDD RRM_CSTF2_CSTF2T 11 85 - -
Lja5g0784 526 MobiDBLite consensus disorder prediction 384 403 - -
Lja5g0784 526 Gene3D - 150 234 - -
Lja5g0784 526 SUPERFAMILY RNA-binding domain, RBD 5 104 IPR035979 GO:0003676
Lja5g0784 526 Pfam Transcription termination and cleavage factor C-terminal 488 520 IPR026896 GO:0031124
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0784 Lja-Chr5 7239695 7248546 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0784 11 84 Eukaryotic Initiation Factors Gene Family AT2G23350 31.081 1.98e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0784 K14407 - gmx:100794399 738.799