Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0783 ATGGCTTCGAGATTTTGGACTCAGGGTGGTAGTGATTCCGAGGAGGAGGAGAGTGATCGCGATGAGGAGGTTGAAACTGTGGCGGTTGAATCCGCCGGTCAAGATGTTAGTAACAGTAACAAGTATTATGCGGAGAATGAGGGTAACAGTGATGACTCTGATGATGATCAAAAGCGCGTTGTCAGGTCGGCCAAAGATAAGCGTTTTGAGGAGATGGCGGCCACTGTCGACCAGATGAAGAATGCTGTCAAAATTAATGACTGGGTGAGTCTGCAAGAGAGCTTTGACAAGATTAACAAGCAGCTTGAGAAGGTCATGCGTGTCACCGGGTCTGACAAGGCTCCCAGGATTTACATCAAGGCTCTTGTGATGCTGGAGGATTTCTTGGCTGAGGCTTTGGCGAATAAGGATGCCAAGAAGAAGATGAGTAGTAGCAATGCCAAAGCCTTGAACGCTATGAAGCAGAAGTTGAAGAAGAATAATAAGCAGTATGAGGAACTGATTACCAAGTGCAGGGAGAATCCCGAGATTGACGAGGAAAAAGAGGAAGAGGAGTCGGATGAAGAGTATGAAACTGATGATGAGATTATCGACCCCGAGCAGCTTAAGAAGCAGCCCGTGCATTCGGATTCGGAAGCCTCTCAATATGAGGATGATAAGCAAGATGATGGAGAAGGACCTTGGGACCAAAAGCTTAGCAAGAGAGACAGGCTTATGGATAGACAGTTCATGAAAGACCCTAGCGAGATCACCTGGGACACTGTTAACAAGAAGTTCAAAGAGGTTGTGGCGGCTAGAGGCAAGAAGGGTACCGGAAGGTTTGAACAGGTTGAGCAGCTCACCTTCTTGACTAAAGTTGCTAAAACACCTGCACAGAAGCTGGAAATTCTTTTCAGTGTGGTCTCTGCTCAGTTTGATGTTAAGCCAGGCCTCAATGGGCATATGCCCATAAATGTGTGGAAGAAATGTGTACAGAATATGCTGATCATTCTGGATGTTCTAGTGCAGTACCCAAACATAAAGGTTGATGATTCAGTGGAACCAGATGAGAATGAAACTATGAAAGGGTCTGACTATGATGGATCTATTCGAGTTTGGGGTAACTTAGTTGCCTTCTTAGAAAAAATAGATGCTGAGTTTTTCAAGAGCCTGCAATGCATAGATCCTCACACACGTGAGTATGTTGAGAGACTTAGGGATGAGCCTGTGTTTTCGGTTCTTGCTCAGAATGTCCAGGAATATCTTGAAATGACTGGCGACTTTAAAGCTGCTTCTAAGGTAGCCTTGAGGAGGGTTGAACTCATCTACTACAAACCACAAGAGGTTTATGATGCCATGAGAAAATTGGCTGAGCTGACAGAAGATGGAGATAATGGAGGGGAGGAGTCAAAAGGTTTTGAGGAAACAAGAATTCCTACTGCATTTGTTGCTACTCCAGAGCTTGTGGCCCGAAAACCCACATTCCCTGAGGATAGTAGGACTCTGATGGATGCATTAGTCTCACTGATATACAGATATGGAGAGGAGCGCACCAAAGCACGTGCAATGCTTTGTGATATATATCACCATGCTCTTCGTGATGAGTTCTCAATAGCCCGTGATCTACTGCTTATGAGTCACTTGCAAGATAACGTTCAGCATATGGACATCTCTACACAGATACTTTTTAACAGAGCTATGTCACAATTAGGTCTCTGTGCTTTTCGTGTTGGACTGATTTCTGAAGCACATGGTTGCTTGTCTGAACTTTATTCTGGTGGAAGGGTGAAAGAGTTGCTTGCACAAGGCGTGTCACAAAGTCGTTATCATGAGAAGACCCCCGAACAGGAAAGGTTGGAAAGAAGACGTCAAATGCCATATCATATGCATATAAATCTTGAGCTTCTGGAGGCAGTTCATCTTATATCTGCTATGCTGCTAGAAGTTCCCAATATAGCAGCCAATGTTCATGATGCAAAGCGCAGGGTCATCAGTAAGACATTTCGTCGCTTGCTTGAGGTCAATGATAAACAAACATTTGTTGGTCCACCTGAGAATGTAAGAGATCACGTTATGGCTGCCACAAGGGTTCTTAGTAAAGGAGACTTCCTCAAGGCTTTTGAAATTATAGTGTCTCTTGATGTATGGAAATTTGTGAAAAACCGGGACACCGTGCTCGAAATGCTGAAGGACAAAATCAAGGAGGAGGCACTTAGGACATATTTGTTTACCTTTGCCTCATCGTATGATTCTTTGAGTGTGGACCAACTCACAAAACTTTTTGATCTCTCTGTTCCTAGAATTCATAGCATTGTCAGTAAGATGATGAGCAATGAGGAGCTTCATGCAAGCTGGAACCAGCCAACTCGGTGTATTGTTTTCCAAAACGTTGAGCACTCTAGGCTGCAGGCGTTGACATTCCAATTGGTAGAGAAGTTATCTATCCTTGCAGAGAGTAATGAAAGAGCTGCAGAGGCAAGGATTGGTGGTGGTGGATTGGATCTGCCTCAGAGGCGGAGAGATGGCCAGGACTATGCTGCTGCTGCAGCTGGTGGTGGCGGTGGAACAGCAGGTGGTAGGTGGCAAGATTTGTCCCTTTCTCAGCCAAGGCAAGGTGGTGGACGCACAGGATATGGTAGTGGTGGTGGAAGGCCAATGGCATTCAGTCAGGCAGCTGGTAGTGGCTATTCTAGGGATCGAACGGGACGGGGAACTGGCGGTGGCTATCAGAGTGCATATAGCGGCGGTTCAGGGAGGGCTCATCATGGGGGTTCAACATTGAGGGGGCACCAGGGCGATGTATCTACTCGCATGGTTAGCCTTAAGGGAGTTCGTGCTTAA 2820 0.4589 MASRFWTQGGSDSEEEESDRDEEVETVAVESAGQDVSNSNKYYAENEGNSDDSDDDQKRVVRSAKDKRFEEMAATVDQMKNAVKINDWVSLQESFDKINKQLEKVMRVTGSDKAPRIYIKALVMLEDFLAEALANKDAKKKMSSSNAKALNAMKQKLKKNNKQYEELITKCRENPEIDEEKEEEESDEEYETDDEIIDPEQLKKQPVHSDSEASQYEDDKQDDGEGPWDQKLSKRDRLMDRQFMKDPSEITWDTVNKKFKEVVAARGKKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVVSAQFDVKPGLNGHMPINVWKKCVQNMLIILDVLVQYPNIKVDDSVEPDENETMKGSDYDGSIRVWGNLVAFLEKIDAEFFKSLQCIDPHTREYVERLRDEPVFSVLAQNVQEYLEMTGDFKAASKVALRRVELIYYKPQEVYDAMRKLAELTEDGDNGGEESKGFEETRIPTAFVATPELVARKPTFPEDSRTLMDALVSLIYRYGEERTKARAMLCDIYHHALRDEFSIARDLLLMSHLQDNVQHMDISTQILFNRAMSQLGLCAFRVGLISEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLISAMLLEVPNIAANVHDAKRRVISKTFRRLLEVNDKQTFVGPPENVRDHVMAATRVLSKGDFLKAFEIIVSLDVWKFVKNRDTVLEMLKDKIKEEALRTYLFTFASSYDSLSVDQLTKLFDLSVPRIHSIVSKMMSNEELHASWNQPTRCIVFQNVEHSRLQALTFQLVEKLSILAESNERAAEARIGGGGLDLPQRRRDGQDYAAAAAGGGGGTAGGRWQDLSLSQPRQGGGRTGYGSGGGRPMAFSQAAGSGYSRDRTGRGTGGGYQSAYSGGSGRAHHGGSTLRGHQGDVSTRMVSLKGVRA* 940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0783 939 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 721 809 - -
Lja5g0783 939 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 907 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Lja5g0783 939 SUPERFAMILY "Winged helix" DNA-binding domain 716 791 IPR036390 -
Lja5g0783 939 ProSiteProfiles PCI domain profile. 620 792 IPR000717 -
Lja5g0783 939 SMART PINT_4 721 809 IPR000717 -
Lja5g0783 939 MobiDBLite consensus disorder prediction 1 65 - -
Lja5g0783 939 MobiDBLite consensus disorder prediction 178 196 - -
Lja5g0783 939 Coils Coil 147 174 - -
Lja5g0783 939 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT C 1 907 - -
Lja5g0783 939 MobiDBLite consensus disorder prediction 197 234 - -
Lja5g0783 939 Pfam PCI domain 660 788 IPR000717 -
Lja5g0783 939 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 2 870 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Lja5g0783 939 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 44 652 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Lja5g0783 939 MobiDBLite consensus disorder prediction 31 46 - -
Lja5g0783 939 MobiDBLite consensus disorder prediction 837 939 - -
Lja5g0783 939 MobiDBLite consensus disorder prediction 169 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0783 Lja-Chr5 7231220 7237473 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0783 1 939 Eukaryotic Initiation Factors Gene Family AT3G56150 66.457 0.0 1175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0783 K03252 - gmx:100781967 1448.72