Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0782 ATGGGTGTGGATTCGGAAGCGCTTTCTGCTGACTGTTTCAGCCAGGTGATGTCGTCGATGCCCGGTTTTCGCTTTCATCCCACGGATGAGGAGTTGATCATGTACTATCTCAAGCGGAAGATTTGCGGGAAGAAGCTCAAGTTCCATGCGATTCGTGAAATTGATGTTTACAAGTGGGATCCTGAGGATTTGCCTGGGCAATCCTTACTAAAAACTGGAGATAAGCAATGGTTCTTTTTCTGTCATAGAGATAGGAAGTATCCTAATGGTGCAAGGTCTAACCGAGCAACAACACACGGATACTGGAAAGCAACAGGAAAGGATCGTAATGTGATGTGCAATTCTCGGTCAGTTGGAGTAAAAAAGACACTGGTTTTCTATTTAGGCAGAGCTCCTAGTGGTGAGAGGACTGATTGGGTTATGCATGAATACACCTTAGATGAAGAGGAGCTCAAGAGATGCCAGGGTGTAAAGGACTATTATGCACTCTACAAGGTTTTCAAGAAAAGTGGAGCTGGTCCTAAAAATGGTGAACAATATGGTGCACCATTTAAAGAAGAAGAGTGGGCAGATGATGAACCTGTAGATTTTAATGTTGTTGCAGCTGTCCAGGTTGCTCCAAATAATGTCACTGACACTGTTAGTGATCTGATGCAGCCTTTGTGTGATGGTGAAATTGATGAGATCATTAGAGGAATTTTGGATGATGAGCTGGTCCCTGATCAGAAACATGTGAATGGTCTTAACTTTACTCAGGTTGTTGCTGAAGAAACACAAAGTACAGTTGCGTTTCAATTCTCTGAGGCTGTGATGTTCCCTGAGCCAAGTGAAAACCTTCACTCTAGTAGTCAGCATTATGATGTACAGCCCAGCTTTGACTTCAATCAGTCAGTTACTTCCCACTTGCATGTTTCTGAAGCACCTGAGATCACTTCTGCTCCCAACATTCAAAGAGAGGATGAACTTCTCTTTCAGGAGAATGACTTCTTGGAAATCAATGATCTAGCTGATACTGAACCTACATTGGCAAATATGGAAAATCATGTTGAGAACCTGCAGTTTGAAGATGGGTTAAGTGAACTTGATCTCTTTCAAGATGCAGAGATGTTTCTTCGTGACTTGGGGCCAATTACTCATGATACTGTTTCACATTCATATATGAATACTGTTGACAGCAATATCGATAGTCAAAATTACCAGTTGTTGACCAATCAAGCTGTTGATGAACTCTGGATGCATGATGTGAGAAACATCCTGAGCTCAGAAGAAGGCTATGATGCTGGTTCAAACTCTCTACCAACCCCAGGTGTCGTATGTGAATCTGTCAACTATCCTCCTGAAGGCAATGAAAATCAAAGCAGCAGCACTGTGGAGGATATTCCTATGACTCCAAGTAGATTCTCCTCTGCTCTTTGGGCTTTTGTGGAGTCAATACCTACTACACCTGCATCAGCTGCTGAAAACGCTCTGGTAAACCGCGCTTTGAATCGAATGTCTAGCTTCAGCAGGGTGAGGATCAAGAACACCAGCATTGCTGCAGGTAAAGACACTGCTACTAAGAAGAGAGCGGGCATGAGGGGAATTTCATTCCTTTTCTTCCCAATTATTGTTGCTTTATGTGCTTTCTTGTGGGTTTCTCTTGGAAATTTAAGAGTATTAGGGAGATGCATCTCTCCTTGA 1680 0.4286 MGVDSEALSADCFSQVMSSMPGFRFHPTDEELIMYYLKRKICGKKLKFHAIREIDVYKWDPEDLPGQSLLKTGDKQWFFFCHRDRKYPNGARSNRATTHGYWKATGKDRNVMCNSRSVGVKKTLVFYLGRAPSGERTDWVMHEYTLDEEELKRCQGVKDYYALYKVFKKSGAGPKNGEQYGAPFKEEEWADDEPVDFNVVAAVQVAPNNVTDTVSDLMQPLCDGEIDEIIRGILDDELVPDQKHVNGLNFTQVVAEETQSTVAFQFSEAVMFPEPSENLHSSSQHYDVQPSFDFNQSVTSHLHVSEAPEITSAPNIQREDELLFQENDFLEINDLADTEPTLANMENHVENLQFEDGLSELDLFQDAEMFLRDLGPITHDTVSHSYMNTVDSNIDSQNYQLLTNQAVDELWMHDVRNILSSEEGYDAGSNSLPTPGVVCESVNYPPEGNENQSSSTVEDIPMTPSRFSSALWAFVESIPTTPASAAENALVNRALNRMSSFSRVRIKNTSIAAGKDTATKKRAGMRGISFLFFPIIVALCAFLWVSLGNLRVLGRCISP* 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0782 559 Pfam No apical meristem (NAM) protein 21 146 IPR003441 GO:0003677|GO:0006355
Lja5g0782 559 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 18 558 - -
Lja5g0782 559 Gene3D NAC domain 28 172 IPR036093 GO:0003677|GO:0006355
Lja5g0782 559 SUPERFAMILY NAC domain 15 169 IPR036093 GO:0003677|GO:0006355
Lja5g0782 559 PANTHER NAC TRANSCRIPTION FACTORS 2 18 558 - -
Lja5g0782 559 ProSiteProfiles NAC domain profile. 19 169 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0782 Lja-Chr5 7223656 7227840 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0782 12 557 NAC Transcription Factor Family AT1G34190 44.293 1.16e-143 424
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lja5g0782 NAM 4.6e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0782 - - gmx:100794925 827.009