Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0773 ATGGCGGCGGCGGCGATGACGACTCCAGCGGTGGTGGCTCAGACTGCAACAGCCCCGGTTGCTCCGGTGACGGCTCCAGCGCCGGCATTGGTCGGAGGAGGGCCATTTGCGAATGCGTCTCTGTACGTAGGCGATCTCGAAGGGAACGTGAACGAGGCGCAGCTGTATGATCTGTTCAGCCAGTTGGCTCAGATTGTCTCGATTAGGGTTTGCAGGGATCAGACCAAGCGATCCTCTCTCGGTTACGCTTATGTCAACTTTGCTAACGCTCAGGATGCGGCTAATGCATTGGAACTTCTGAACTTCACTCCTGTGAATGGGAAGCCTATTCGGATTATGTTTTCTCAGCGTGATCCGAGCATCCGGAAAAGTGGATATGCCAATGTGTTTATCAAGAACCTGGACACATCAATTGATAACAAGGCATTGCATGACACTTTTGCTGCCTTTGGCCCTGTGCTTTCTTGTAAGGTGGCTGTTGATGCATCTGGTCAGTCGAAAGGGTATGGTTTTGTGCAGTTTGACAATGATGAGGCTGCCCAGAATGCCATTAACAAGTTGAATGGCATGCTGATTAATGATAAGAAAGTCTATGTTGGACTCTTTGTGCGGCACCAGGAAAGGGGTCGAGCAAATGGATCACCCAAGTTCACTAATGTTTATGTCAAGAACCTTTCTGAATCATGCACTGATGAGGACCTGAAGCAGCTATTTGCCCCCTTTGGTGTGATAACTAGTGCAACAGTTATGAAAGATGTGAATGGCAATTCCAAATGCTTTGGCTTTGTGAATTTCGAGAGCCCAGATTCAGCGGCTGCTGCAGTTGAGAAGTTGAATGGGACAACTATCAATGATGACAAGGTTTTATATGCGGGAAGAGCTCAGAGGAAAGCAGAAAGAGAAGCTGAGTTGAGAGCCAAATTTGAGCAGGAAAGAATTAGCAGATATGAAAAGTTACAAGGTGCTAACTTGTATGTGAAAAATCTTGATGACAACATCAATGATGAAAAGCTGAAGGATTTGTTTTCCGAGTTTGGAACTATAACATCGTTCAAGGTGATGCTGGATTCTTATGGGAATAGCAAAGGTTCTGGTTTTGTGGCCTTTTCTACTCCTGAGGAAGCAAATCAAGCCATGACTGAGATGAATGGGAAGTTGGTTGGTCGGAAGCCTCTCTATGTTGCTGTCGCCCAGCGCAAAGAAGACAGGAAGGCTCGATTGCAGGCTCATTTTGCTCAAATCCAAGTACCTGGTGGAATGGCACCTCTGCCTGCAGGAATTCCTGGATATCATGCAGGGACCCCAAGACTTGCCCCTCAACAGCTATATTATGGTCAAGGGTCACCTGGCTTCATGCCCCCTCAGCCTGCTGGATATGGTTTCCAGCAGCAAATGTTGCCAGGAATGCGGCCTGGTGTTGCTCCAAATTTCATTATGCCATACCAGGTTCAGAGACAGGGTCAGCCTGGGCAGAGAATGGGTGGTCGACGAAATGGAAACCTCCAATCAGGGCAGCCGAATCAAGTGCCACATCGCAACTCCAACCAAGGGTTTAGATATATGGCCACCAATCGAAATGGTATGGACCCATCTGTTGTTCCTCAAAGTTCAGTGGGTCCAGTGATGCCCATGCCCTTTGATGGTTATGGAGTTACTGCAGCTCCTGCTGAAAATCAGCGTCCCGCGGTGTCATCTGCCACACTTGCCTCAACTTTGGCTTCTGCTACCCCAGAAAATCAGCGCCTGATGTTGGGAGAACATCTATATCCCCTCGTGGAGCATCTTACCCCAAACCAACATACTGCAAAGGTGACTGGGATGTTGCTGGAGATGGACCAGTCAGAGGTAATACATCTTATTGAATCTCCTGAGGACCTGAAGATGAAGGTGTCTGAGGCATTGCGGGTCCTTCGTGATGCTGCTGCACCAGGTTCTGAAGTTAGTGATCAGCTTGGCTCATTCTCATTGAATGAATGA 1977 0.4831 MAAAAMTTPAVVAQTATAPVAPVTAPAPALVGGGPFANASLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANALELLNFTPVNGKPIRIMFSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVDASGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKVYVGLFVRHQERGRANGSPKFTNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGNSKCFGFVNFESPDSAAAAVEKLNGTTINDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLDDNINDEKLKDLFSEFGTITSFKVMLDSYGNSKGSGFVAFSTPEEANQAMTEMNGKLVGRKPLYVAVAQRKEDRKARLQAHFAQIQVPGGMAPLPAGIPGYHAGTPRLAPQQLYYGQGSPGFMPPQPAGYGFQQQMLPGMRPGVAPNFIMPYQVQRQGQPGQRMGGRRNGNLQSGQPNQVPHRNSNQGFRYMATNRNGMDPSVVPQSSVGPVMPMPFDGYGVTAAPAENQRPAVSSATLASTLASATPENQRLMLGEHLYPLVEHLTPNQHTAKVTGMLLEMDQSEVIHLIESPEDLKMKVSEALRVLRDAAAPGSEVSDQLGSFSLNE* 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0773 658 SMART rrm1_1 219 292 IPR000504 GO:0003723
Lja5g0773 658 SMART rrm1_1 323 395 IPR000504 GO:0003723
Lja5g0773 658 SMART rrm1_1 128 200 IPR000504 GO:0003723
Lja5g0773 658 SMART rrm1_1 40 113 IPR000504 GO:0003723
Lja5g0773 658 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 127 204 IPR000504 GO:0003723
Lja5g0773 658 SUPERFAMILY PABC (PABP) domain 475 643 IPR036053 GO:0003723
Lja5g0773 658 Gene3D - 305 408 IPR012677 -
Lja5g0773 658 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 564 642 IPR002004 GO:0003723
Lja5g0773 658 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 39 117 IPR000504 GO:0003723
Lja5g0773 658 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 41 111 IPR000504 GO:0003723
Lja5g0773 658 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 324 392 IPR000504 GO:0003723
Lja5g0773 658 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 129 197 IPR000504 GO:0003723
Lja5g0773 658 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 220 287 IPR000504 GO:0003723
Lja5g0773 658 Coils Coil 291 319 - -
Lja5g0773 658 Pfam Poly-adenylate binding protein, unique domain 572 637 IPR002004 GO:0003723
Lja5g0773 658 Gene3D - 203 304 IPR012677 -
Lja5g0773 658 PANTHER POLYADENYLATE-BINDING PROTEIN 34 644 - -
Lja5g0773 658 SMART rrm2_1 219 291 IPR003954 GO:0003676
Lja5g0773 658 SMART rrm2_1 128 200 IPR003954 GO:0003676
Lja5g0773 658 SMART rrm2_1 40 113 IPR003954 GO:0003676
Lja5g0773 658 SMART rrm2_1 323 395 IPR003954 GO:0003676
Lja5g0773 658 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 218 296 IPR000504 GO:0003723
Lja5g0773 658 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 39 638 IPR006515 GO:0003723
Lja5g0773 658 MobiDBLite consensus disorder prediction 486 514 - -
Lja5g0773 658 Gene3D - 562 641 - -
Lja5g0773 658 PANTHER RNA BINDING PROTEIN 34 644 - -
Lja5g0773 658 CDD RRM3_I_PABPs 217 297 - -
Lja5g0773 658 CDD RRM4_I_PABPs 321 399 - -
Lja5g0773 658 SUPERFAMILY RNA-binding domain, RBD 217 402 IPR035979 GO:0003676
Lja5g0773 658 SMART poly_2 576 640 IPR002004 GO:0003723
Lja5g0773 658 CDD RRM1_I_PABPs 40 119 - -
Lja5g0773 658 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 322 399 IPR000504 GO:0003723
Lja5g0773 658 SUPERFAMILY RNA-binding domain, RBD 39 206 IPR035979 GO:0003676
Lja5g0773 658 Gene3D - 128 201 IPR012677 -
Lja5g0773 658 CDD RRM2_I_PABPs 125 200 IPR045305 -
Lja5g0773 658 Gene3D - 35 127 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0773 Lja-Chr5 7165760 7170315 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0773 8 643 Eukaryotic Initiation Factors Gene Family AT1G22760 57.032 0.0 699
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0773 K13126 - gmx:100783163 1019.99