Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0745 ATGGGGTGTGTTCAGGCCAAGGCAATGGAAGAAGGTGGTGGTTCTGGCTACAGGGGTATTGACAGGTTGAAAATGGAAAGTGGGTATGTTGCAAGTTCTGATTTTGTTGCTCATAGGAGATCCACTGGTCAAAGACATGATGAAGAACCCAGAAAGCAGAAAGCTGAGCCTGGTGCTGGCAATGGTGAAAGGAGAGAGCTTGCTGATGTGGGTGGTGTGGGGAAGAGAGATGCTGATGTGGGTCGTGGGAGTAAGAAGCTGCCAAATAAGTCTTTTGAGGATGAGATGGTTGATGGTTGGCCTAAATGGTTTGTTGAGAATGTTCCTGTACAAGCGTTGGCTGGCTTGGTTCCCAAGAGTGCTGAATCATACAAAATGATTGATAAGGTAGGACAAGGAACCTACAGCAATGTTTATAAAGCTCTAGATCGAGAGACAGGAGAAATTGTCGCCCTTAAGAAAGTCCGCTTCAATACATCAGAACCTGAAAGCATTAAATTCATGGCTAGAGAAATTATGATATTACAGAAATTGGATCATCCCAATGTAGTAAAACTCAAAGGCTTAGCCACTTCAAGAATGCATTACAGTATATATCTAGTTTTTGAGTTCATGCCAACAGATTTGGCCAGAGTTATTACTCGGTCCGAAGAGAGACTAACTGAACCGCAGGTCAAGTGCTATATGCATCAATTGCTTTCAGGTCTGCGCCATTGCCATGATAGGGGAATTCTGCATCGAGATATAAAGGGGTCAAACCTTTTGATTGATCAAAATGGGATGCTTAAGATCGCAGATTTCGGGCTTGCCAATCATTATGGTCCAAACCATGACCAGCCTCTCACAAACCGGGTTGTGACTCTGTGGTACAGAGCTCCTGAGTTGTTGTTAGGTTCCACAGATTATGGAGTTGGTATAGATCTATGGAGTGCTGGATGTCTCTTGGCAGAAATGTTTAAAGGAGTTCCAATCATGCCTGGTAAAACAGAGGTTGAGCAACTGCATAGAATTTTCAGGCTATGTGGCACACCATCAGAGGAGTATTGGAGAAAATTAAAACTTTCGACAACTTTTAGACCACCAAAGTCTTATAGACCCAGCCTTGTAGAAACTTTCAGGGATCTCCCTCCATCTTCTTTAGGTCTCTTATGTACTCTTCTTGCTTTGGATCCTGCATTTCGGGGCAGTGCATCTAAAGCTCTTAACAATCAGTTTTTCTTTACAAGCCCCTTGGCATGTGATCTCTCTGGTCTTCCTGTGATCTCCAAACAAGAAGATGAGCATATTCGAGCCAATGAACAGATCAAGTATATGAACTCTAAAATCAGGCGTTCTCGCACATATATGGAGCGTCGCAAGAATTTAGCATCTAATAAGACAATAGAACATACTGTATCATCTAAAGAGGATATCAGAAGAAATGATGAGCCTGAAACTTACGTTCCAAGTGAAGAACCAGGGAGCACAACAAGTAGTACCTCATCTAGTGCAAACCCATCTGGGGCTAAGGATCACTCACCTTTATTTCCCCCTCTACTCCGGCCTTCAGATCAAAAGTTGCCCCCGAAAATCCATCGCCATGCTTATGTTGGTGGGAAAAGCATCAAGAACCTTCCCCCATCATCCAAGTCAAAACCAAATGCAGCCAAGAAAGATGACAGCAGATACAGACCAGACCAGGTTTTCAGGTCTGCTTCCACCAGAGAATTTAGAAACTCAAAACGGGAACAGCATTTACTCTTTGAAATTGATGATTAG 1758 0.4323 MGCVQAKAMEEGGGSGYRGIDRLKMESGYVASSDFVAHRRSTGQRHDEEPRKQKAEPGAGNGERRELADVGGVGKRDADVGRGSKKLPNKSFEDEMVDGWPKWFVENVPVQALAGLVPKSAESYKMIDKVGQGTYSNVYKALDRETGEIVALKKVRFNTSEPESIKFMAREIMILQKLDHPNVVKLKGLATSRMHYSIYLVFEFMPTDLARVITRSEERLTEPQVKCYMHQLLSGLRHCHDRGILHRDIKGSNLLIDQNGMLKIADFGLANHYGPNHDQPLTNRVVTLWYRAPELLLGSTDYGVGIDLWSAGCLLAEMFKGVPIMPGKTEVEQLHRIFRLCGTPSEEYWRKLKLSTTFRPPKSYRPSLVETFRDLPPSSLGLLCTLLALDPAFRGSASKALNNQFFFTSPLACDLSGLPVISKQEDEHIRANEQIKYMNSKIRRSRTYMERRKNLASNKTIEHTVSSKEDIRRNDEPETYVPSEEPGSTTSSTSSSANPSGAKDHSPLFPPLLRPSDQKLPPKIHRHAYVGGKSIKNLPPSSKSKPNAAKKDDSRYRPDQVFRSASTREFRNSKREQHLLFEIDD* 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0745 585 SUPERFAMILY Protein kinase-like (PK-like) 119 410 IPR011009 -
Lja5g0745 585 Gene3D Transferase(Phosphotransferase) domain 1 207 447 - -
Lja5g0745 585 MobiDBLite consensus disorder prediction 546 571 - -
Lja5g0745 585 MobiDBLite consensus disorder prediction 453 571 - -
Lja5g0745 585 ProSitePatterns Serine/Threonine protein kinases active-site signature. 244 256 IPR008271 GO:0004672|GO:0006468
Lja5g0745 585 PANTHER CELL DIVISION PROTEIN KINASE 1 550 - -
Lja5g0745 585 ProSiteProfiles Protein kinase domain profile. 124 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g0745 585 MobiDBLite consensus disorder prediction 1 20 - -
Lja5g0745 585 ProSitePatterns Protein kinases ATP-binding region signature. 130 153 IPR017441 GO:0005524
Lja5g0745 585 SMART serkin_6 124 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g0745 585 MobiDBLite consensus disorder prediction 34 90 - -
Lja5g0745 585 Gene3D Phosphorylase Kinase; domain 1 116 206 - -
Lja5g0745 585 Pfam Protein kinase domain 124 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g0745 585 PANTHER CYCLIN-DEPENDENT KINASE 1 550 - -
Lja5g0745 585 MobiDBLite consensus disorder prediction 483 502 - -
Lja5g0745 585 MobiDBLite consensus disorder prediction 39 90 - -
Lja5g0745 585 MobiDBLite consensus disorder prediction 453 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0745 Lja-Chr5 6851289 6856103 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0745 119 441 Core Cell Cycle Gene Families AT5G10270 45.748 1.41e-95 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Lja5g0745 Pkinase 3e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0745 K08819 - gmx:100776854 845.499
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0745 5 6851289 6856103 Lja5g0745 5 6851289 6856103 ECH